Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1124 ATGGCTCCCAACCTTGAATGTCGGATGTACGAGGCCAAGTATCCGGAAGTGGACATGGCCGTTATGATACAGGTCAAGAACATCGCCGACATGGGCGCATACGTCTCACTTCTTGAGTATAACAACATCGAGGGCATGATCTTGTTCTCCGAGCTCTCTCGCCGTCGGATTCGTAGCGTCAGCAGTCTCATCAGGGTCGGCCGCATCGAGCCCGTCATGGTTCTCAGGGTCGACAAAGAAAAGGGTTACATCGATTTGAGCAAGAGAAGGGTGTCTGAGGAGGATATGCAGGCTTGCGAGGAGAGGTACAACAAGAGCAAGCTTGTTCATTCCATCATGCGTCACGTTGCTGAGACTGAGAATATCGATTTAGAGGAGCTGTATGTTCACATCGGATGGCCTCTATATCGCAAATACAGTCATGCTTTTGAGGCATTCAAAATAATTGTTACCGATCCTGATTCAGTTTTGAATTCCCTCACCCGTGAGGTCAAGGAGGTTGGCCCTGATGGGCAGGAGGTGACCAAGGTGGTTCCAGCGGTATCAGAAGAGGTGAAAGAAGCTCTAGTAAAGAACATCAGAAGACGAATGACTCCCCAACCCTTGAAAATTAGGGCAGATATAGAAATGAAGTGTTTTCAATTTGATGGAGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGCTGGAAATAATGATTGCCCAGTAAAGATTAAACTTGTTGCTCCTCCACTTTATGTTCTTACCACTCAAACTCTTGACAAGGAGCAAGGAATATTGGTTCTCAAAGATGCTATTGAGGCCTGCACTACAGCCATAGAGCAACACAAAGGCAAACTAGTTGTGAAGGAGCAACCCAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAACACATGGCTAAGCTACGCCAAGATAACGAGGAGGTCAGTGGTGATGAAGATAGTGAGGAGGAAGAGGATACAGGAATGGGAGAAGTTGATGTGGACCAGGGTGCTGGGATAACAGAGTGA 1023 0.4702 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDMQACEERYNKSKLVHSIMRHVAETENIDLEELYVHIGWPLYRKYSHAFEAFKIIVTDPDSVLNSLTREVKEVGPDGQEVTKVVPAVSEEVKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNNDCPVKIKLVAPPLYVLTTQTLDKEQGILVLKDAIEACTTAIEQHKGKLVVKEQPRAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVDQGAGITE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1124 340 MobiDBLite consensus disorder prediction 313 329 - -
Lele28g1124 340 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Lele28g1124 340 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 195 IPR024054 -
Lele28g1124 340 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 196 - -
Lele28g1124 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 330 IPR011488 GO:0003723|GO:0003743
Lele28g1124 340 Gene3D EIF_2_alpha 202 324 IPR024055 -
Lele28g1124 340 SUPERFAMILY Nucleic acid-binding proteins 12 94 IPR012340 -
Lele28g1124 340 MobiDBLite consensus disorder prediction 302 340 - -
Lele28g1124 340 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Lele28g1124 340 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Lele28g1124 340 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 316 IPR024055 -
Lele28g1124 340 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Lele28g1124 340 Gene3D - 3 91 IPR012340 -
Lele28g1124 340 SMART S1_6 16 89 IPR022967 -
Lele28g1124 340 Coils Coil 303 323 - -
Lele28g1124 340 FunFam Eukaryotic translation initiation factor 2 subunit 1 202 324 - -
Lele28g1124 340 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Lele28g1124 340 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1124 Lele-ChrLele28 7282549 7286446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1124 2 340 Eukaryotic Initiation Factors Gene Family AT5G05470 81.765 0.0 538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0947 27 17358848 17363025 Lele28g1124 28 7282549 7286446 ECH
Lele28g1124 28 7282549 7286446 Lele28g1124 28 7282549 7286446 ECH
Lele25g1132 25 7296743 7300274 Lele28g1124 28 7282549 7286446 hybridization
Lele26g1132 26 7289785 7296481 Lele28g1124 28 7282549 7286446 hybridization