LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1117	ATGGCGGGGTTAATGAGGATGCTCACTGTACAAAATCACAGTCAATTAATTGTTACAACCAATGTCGCACAAAAAGAGGAATTTACATCAATCAGAGCATCCATTGAAATCTTACCGAAAGCTACTCTGTCAGATTGCTCCTTTGTTCTAAGACCTGGAATTGATGTATGTGTGTTATCAGCATCTCAACAGGATAATGCTTCAGGGAAAATTTGTCTTGAACCTTGTCACATTGCCTGGTTCATCATTTTGGCCTTTTGCAATGTTATCTTTGCACTTTACTGGGCTCATCATGAGTGGGCTGATGCTAGAATAAGATCTGTACAGAGAAAGCCCCACGTATCCGAATGTTCATGTGAATATTTTGTCAACCTCTATTTTAATCAAGGTTGTTATGGTAAAGAGAAGAGAATTCTTAATAAGGAGATTAAAATGGTTGGAATAAATGAAATATCCATCTTTCAGAAGCTTGATCGTAATCCCTGTGAAGATCAGCATTATCGGTGGGATTCATCTGAGGATTGCTTTGAAGCACGAAAGACTAAATTGTTTGCAGGAAAATTCTTATCTGATCTTTCATGGTTAGTTGTTACGTCAGTTTTGAAGCAGGTCTCATTCTGTGTAAGATCTGTAGAATGCAAGATTGTGTATCAAATTTTGGGATGTGAACATTCTAGCTCTTCATTGAACTATAATTCTTTTGAACATGTAAATTTCAGAGTAGACAGTGGGATGTTAGTACCCATTATTTCTCATCTTGTTCCATCCGACAACAATAAGGTAGACCAAGCAAAAGATGCATATGAAGATGAGATATCACCAATTTCTTGCATTGAGGGTTTACGGCGTTCCAAACGTCGTAACATAGAACCTGAACGTTATCTTGGTTATGATGACATCTCTAAGTTGGATTTTGGTCATGTTCGAACCAGTTTACCCAAGTTCAGCACAAGAAATGATGATGACAAAGATGATGTTGATCTACTCGCAAATTGTCCAGAAAAAGACATAGATGCTTGTCAAAATATTAAGAAGATAAATACCTGCCAGGAGGTCCTAGCGAACAATGGTAGAGCTGCAAGTGGGAAGATGAAGCTTGATAATGTTGATAAAAAAGGTCATGAGACTCAACTTTTTAGTGATTCCCTGCCTGATGGAGATGGTTCAGTAGCCCTTGACCATTATTTTCTCAATACCAATAGCACTGGAAATTCTAGGCATGAAAATTGTGTTTTTTCTGAATATGATCATCTGACACATAGCCCTGACCTGAACAGGAAAATTGTTGATCCATGGACATTTGAACCCTATGATCATCAATCAAAAGTTCCTGATCCTGAAAATTCTGCAATAGAGATTGATGATAAATCTTCTGTATGTTATCACTTTGGTACCTGTAATGTTCAGACGAAGGATTCATCTGGTCCGGAGGACATGGATGCTGAAAATAGATGGGAAGGGATACATTCTGATAAAGAAATTCAGGAAAAAGAATATCATCCACCAGTGACAAGAAGTAAAAGTCGTGAGGAAGAAAGAACTTGCAAAGACAGATACTTAAGTGATGCTGAAAATTCTGCAAAAGAGATCGGTGAAAAATCTTCTGGATGTTATTGTTTTGGTACCTGTAATGTCCCGAGGAAGGATTTATCCGGTCAGGAGGACATGGATACTGAAAATAGATGGGAAGGTGTTCATTCCGCTAAAGGAATTCAGGAGGAAATATATCATCCGCCAGTGACAAGAAGTAAGAGTCGTGAGGTAGAAAGAACTTACAAAGACAGATCCTTAAGTGATGCTGAAAATTGTGCAAAAGAGATTGGTGATAAATCTTCTGGATGTTATTGTTTTGGTACCTGTAATGTCCCGGGGAAGGATTTATCCAGTCAGGAGGACATGGATACTGAAAATAGATGGGAAGGGGTTCATTCCGATAAAGGAATTCAAGGGGAAATATATCATCCGCCAATGACAAGAAGTAAGAGTCGTGGGGTAGAAAGAACTTACAAAGACAGATTCTCAAGTGATGCCGAAAATTGTGCAAAAGAGATTGGTGACAAATCTTCTGGATGTTATTGTTTTGGTACCTGTAATGTCCCGGGGAAGGATTTATCCAGTCAGGAGGACGTGGATACTGAAAATAGATGGGAGGGGGTCCATTCCGATAAAGGAATTCAAGGGGAAAAATATCATCCACCAATGACAAGAAGTAGGAATCGTGGGGAAGACAGATCCTTAAGTGATGCTGGAAATTCTGCGGAAGAGATTGGTGATAAATCTTCTAGATGTTATTATTTTGGTACCTGTAATGTGCAGAGGAAGGACTTATCTGGTCTGGAGGACATGGGTGCTGAAAATAGATGGGAAAGGATACGTTCCAATAAAGAAATTCAAGGGAAAAAATATCATTCCCCAATGACAAGAAGTAACAGTTATGGGCAAGAAAGAACTTATAAAAAGGGATCCTTAAGTGATGCTGCCTACATGGAATTGATAGATTTGTACTTAAAGAATACTGACACGGCGCCAACTGAGGAGCCACCTATAACTGACCAGTGGGTAGAATTTAAGGCAACAAGCGACTATAGGCAAAACGGGGGAGCAGGAGCTGACGAAGAAGTTTCTGAAATTGATATGTTGTGGAGAGAAATGGAAGTTGCATTAGCATCAAATTATGTGTTTGATAACACAGAGGGTTCAAAGGCTGCAGTCTTTTCTGAGACTGAGGAAAATTCTTACAAACTTTGTCAACACGATTTTAGATTGGATGAAGAAATTGGGATTTACTGCCGTATATGTGGCTTTGTGAGAACTGAGATAAGAGACATAACACCACCCTTTTTGCAGAATTCGGGATGGCAACAAGATGAAAAGGAGTGGAATGCTGAAAATTTGGAGGCAAAGGCCGATGAGAATGATAGTTTACATCTTTTCTCAGATCACACTTCAACTGATAGGCCTGTATCTGAAGAAAATGATATCTGGGGACTGATCCCCGAACTTACTAGTAAGTTGCATGTTCACCAGAAAAAGGCTTTTGAATTTCTTTGGAAAAATATTTCTGGATCTGTGGAACCAGCATCTGTGAAAGCTACATCTAAAAGAATAGGTGGCTGTGTGATATCTCATTCACCTGGAGCTGGAAAAACTTTTCTAATTATTGCATTTCTTGCAAGCTACTTGAAGTTGTTCCCAGGTAAGAAACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACGTGGTATAAAGAATTTATCAAATGGGAAATTCCTATACCAGTGTATCTGATTCAATCTCAGCGTCGAGCCCGTGGAGCATGCACGGAGAAGTCAATGGTTATTCCTGGTGTTCCAAAGCCCTCTGGAGATGTCAGGCATCTTTTGGACTCTCTGGAAAAGATACAGAAGTGGCAGTCGCACCCTAGTGTTCTAATCATGAGTTATACTTCCTTTTCTAGGCTGATGGGAGAGAATTCAAAGCTTTCTTACCGAAACTATATGGCTAAAGTCTTGAGGAAAAATCCAGGGGTCCTTATTCTTGATGAAGGGCACAATCCTAGAAGTACAGAATCATGTTTGAGGAAAGCCTTAATGAAAGTAGACACGGAATTGAGAATACTACTTTCAGGTACATTGTTTCAGAATAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGTTCATGAAGTGCTGAGAGAATTAGACCCCAAGTACACGAGGGAAAAAATTAGAGCTGAAAGAAAACCGAAGTTAATAGAATCACGGGCAAGAAAGTTCTTCTTAGATAAAATTACAAAAAAAATAGACTCTGATAATAGTGATGAGAGACTGCAGGGTCTAAACATGTTAAGAAAGATCACAAATGAATTTATAGATGTTTATGAAGGTGGAAGTTCTGATAATCTTCCTGGTTTGCATGTTTATACATTGTTAATGAATATTACTGATTGTCAAGATCAGATTTTTCGAGCACTTTATGAAAAAATAGCCGACTCCAATCGATATCATCTGGAGTTGGAGCTTTTGGTAACCCTCGGAGCAATACATCCATGGCTAATCACAACGGCCGCATGCTCTGATAAGTTTTTAACCAAGGCTCAAAGGTGGGAGCTGGAAAAATGCAAGTTTGATTTGAGTATAGGGCCAAAAGTAAGGTTTGTTTTGAGCCTTGTATATCGTGTTTACAAGGAGGAAAAGACTCTTGTTTTTTTCCACTACATTGCACCTATGAGATTGTTTGTAGAACTATTTGAGAAAACCTTTGGATGGAAGATAGGTCGTGAAGTTTTGGTACTTTGTGGGGAACAAGATCTCTTTGAACGTGGGAGAGTCATCGATAAGTTTGAGGAGCCTGGAGGAGCATCAAAGGTACTCCTGGCTTCAATCACAGCCTGTTCTGAAGGCATTAGTCTGACAGCGGCTTCTCGCGTGATTTTGTTGGACTCAGAGTGGAATCCATCAAGAACAAGGCAAGCCATCGCCCGTGCCTTTCGTCCCGGTCAGCAAAGGATCGTATATGTGTATCGGCTTTTGGTGACAGGCACAATGGAGGAACAAAAGTATAACAGAACCACTTGGAAAGAGTGGGTTTCAAGGATGATTTTTAGTGAGGACTTTGTGGAGGATAAATCCCAGTGGCAATTAGAAAAGCTTGAAGATGACATCCTTCAGGAAATGATTGCAGAAGACAACTCCAAAATATTCCATATGATAATGAAGGATGAGAAGGCTTCAACCAACTGA	4758	0.3945	MAGLMRMLTVQNHSQLIVTTNVAQKEEFTSIRASIEILPKATLSDCSFVLRPGIDVCVLSASQQDNASGKICLEPCHIAWFIILAFCNVIFALYWAHHEWADARIRSVQRKPHVSECSCEYFVNLYFNQGCYGKEKRILNKEIKMVGINEISIFQKLDRNPCEDQHYRWDSSEDCFEARKTKLFAGKFLSDLSWLVVTSVLKQVSFCVRSVECKIVYQILGCEHSSSSLNYNSFEHVNFRVDSGMLVPIISHLVPSDNNKVDQAKDAYEDEISPISCIEGLRRSKRRNIEPERYLGYDDISKLDFGHVRTSLPKFSTRNDDDKDDVDLLANCPEKDIDACQNIKKINTCQEVLANNGRAASGKMKLDNVDKKGHETQLFSDSLPDGDGSVALDHYFLNTNSTGNSRHENCVFSEYDHLTHSPDLNRKIVDPWTFEPYDHQSKVPDPENSAIEIDDKSSVCYHFGTCNVQTKDSSGPEDMDAENRWEGIHSDKEIQEKEYHPPVTRSKSREEERTCKDRYLSDAENSAKEIGEKSSGCYCFGTCNVPRKDLSGQEDMDTENRWEGVHSAKGIQEEIYHPPVTRSKSREVERTYKDRSLSDAENCAKEIGDKSSGCYCFGTCNVPGKDLSSQEDMDTENRWEGVHSDKGIQGEIYHPPMTRSKSRGVERTYKDRFSSDAENCAKEIGDKSSGCYCFGTCNVPGKDLSSQEDVDTENRWEGVHSDKGIQGEKYHPPMTRSRNRGEDRSLSDAGNSAEEIGDKSSRCYYFGTCNVQRKDLSGLEDMGAENRWERIRSNKEIQGKKYHSPMTRSNSYGQERTYKKGSLSDAAYMELIDLYLKNTDTAPTEEPPITDQWVEFKATSDYRQNGGAGADEEVSEIDMLWREMEVALASNYVFDNTEGSKAAVFSETEENSYKLCQHDFRLDEEIGIYCRICGFVRTEIRDITPPFLQNSGWQQDEKEWNAENLEAKADENDSLHLFSDHTSTDRPVSEENDIWGLIPELTSKLHVHQKKAFEFLWKNISGSVEPASVKATSKRIGGCVISHSPGAGKTFLIIAFLASYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIQSQRRARGACTEKSMVIPGVPKPSGDVRHLLDSLEKIQKWQSHPSVLIMSYTSFSRLMGENSKLSYRNYMAKVLRKNPGVLILDEGHNPRSTESCLRKALMKVDTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLRELDPKYTREKIRAERKPKLIESRARKFFLDKITKKIDSDNSDERLQGLNMLRKITNEFIDVYEGGSSDNLPGLHVYTLLMNITDCQDQIFRALYEKIADSNRYHLELELLVTLGAIHPWLITTAACSDKFLTKAQRWELEKCKFDLSIGPKVRFVLSLVYRVYKEEKTLVFFHYIAPMRLFVELFEKTFGWKIGREVLVLCGEQDLFERGRVIDKFEEPGGASKVLLASITACSEGISLTAASRVILLDSEWNPSRTRQAIARAFRPGQQRIVYVYRLLVTGTMEEQKYNRTTWKEWVSRMIFSEDFVEDKSQWQLEKLEDDILQEMIAEDNSKIFHMIMKDEKASTN	1585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1117	1585	Gene3D	-	1308	1585	IPR027417	-
	Lele28g1117	1585	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	995	1249	IPR027417	-
	Lele28g1117	1585	CDD	SF2_C_SNF	1380	1516	-	-
	Lele28g1117	1585	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1305	1573	IPR027417	-
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	718	755	-	-
	Lele28g1117	1585	Pfam	Helicase conserved C-terminal domain	1389	1504	IPR001650	-
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	648	668	-	-
	Lele28g1117	1585	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1030	1230	IPR014001	-
	Lele28g1117	1585	SMART	helicmild6	1420	1505	IPR001650	-
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	488	516	-	-
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	718	749	-	-
	Lele28g1117	1585	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	515	1584	IPR044567	GO:0080188
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	798	817	-	-
	Lele28g1117	1585	Gene3D	-	977	1272	IPR038718	-
	Lele28g1117	1585	SMART	ultradead3	1001	1238	IPR014001	-
	Lele28g1117	1585	MobiDBLite	consensus disorder prediction	803	817	-	-
	Lele28g1117	1585	Pfam	SNF2-related domain	1004	1331	IPR000330	GO:0005524\|GO:0140658
	Lele28g1117	1585	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1391	1557	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1117	Lele-ChrLele28	7237977	7244204	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1117	1403	1557	RAD5 or RAD16-like Gene Family	AT5G43530	34.839	1.73e-12	70.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele28g1117		SNF2_N	6e-18	CL0023