Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1104 ATGGCGGATCAGTTAGCAAGGGCTGAGGAATTCGAGGCAAAAGCAGAAAAGAAGCTTAATAGCTGGGGATTGTTTGGCTCCAAACATGAGGATGCTGCTGATCTCTTCGATAGAGCCGCCAATTCCTACAAGCTTGCTAAAGCATGGGATAAAGCAGGCTCGACATACATCAAGTTGGCAAATTGTTACTTCAAGGTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGATGCTGCTCATTGCTATAAAAAGACAAATATAACAGAGGCTGTATCTTGCTTGGACAAAGCAGTGAATACTTTCTGTGAAATTGGAAGACTTAGTATGGCTGCTAGATATTTTAAGGAAATTGCTGAATTGCATGAGTCTGAACAGAACATTGAGCAGGCTATTGTTTACTATGAAAAAGCAGCTGATTTTTTTGCAAATGAAGAAGTGACAACTTCTGCTAACCAGTGCAAGCAAAAAGTTGCTCAGTTTGCTGCTCAGCTTGAACAATATCAGAAGGCAATAGAGATTTATGAAGAAATAGCTCGCCATTCTCTGGGCAGTAGTTTGTTGAAGTATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTGTTGCCATCACCAATGCACTAGAGCGATATCAGGAATTGGATCCAACATTTTCAGGAACACGGGAATATAGACTTTTGGCGGATATTGCTGCTTCCATTGACGAAGAAGATGTTGGGAAGTTTACTGATGTTGTGAAGGAGTTTGACAGCATGACCCCTCTGGATTCTTGGAAGACGACTCTACTTTTGAGAGTGAAGGAAAAGCTGAAATCTAAAGAACTCGAGGAGGACGATCTCACCTAA 870 0.4184 MADQLARAEEFEAKAEKKLNSWGLFGSKHEDAADLFDRAANSYKLAKAWDKAGSTYIKLANCYFKVESKHEAAQAYVDAAHCYKKTNITEAVSCLDKAVNTFCEIGRLSMAARYFKEIAELHESEQNIEQAIVYYEKAADFFANEEVTTSANQCKQKVAQFAAQLEQYQKAIEIYEEIARHSLGSSLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADIAASIDEEDVGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKSKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1104 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Lele28g1104 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Lele28g1104 289 SUPERFAMILY TPR-like 7 281 IPR011990 GO:0005515
Lele28g1104 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Lele28g1104 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Lele28g1104 289 Coils Coil 151 178 - -
Lele28g1104 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Lele28g1104 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Lele28g1104 289 CDD SNAP 7 278 IPR000744 GO:0006886
Lele28g1104 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Lele28g1104 289 SMART tpr_5 53 86 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1104 Lele-ChrLele28 7157705 7161928 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1113 26 7186322 7186621 Lele28g1104 28 7157705 7161928 CCT
Lele27g0965 27 17469173 17470726 Lele28g1104 28 7157705 7161928 CCT
Lele25g1111 25 7179707 7184321 Lele28g1104 28 7157705 7161928 CCT
Lele28g1104 28 7157705 7161928 Lele25g1110 25 7174472 7177626 CCT
Lele28g1104 28 7157705 7161928 Lele26g1110 26 7171291 7173673 CCT
Lele28g1104 28 7157705 7161928 Lele27g0968 27 17482498 17484372 CCT
Lele28g1104 28 7157705 7161928 Lele28g1103 28 7152155 7154892 CCT
Lele27g0967 27 17474937 17479237 Lele28g1104 28 7157705 7161928 ECH
Lele28g1104 28 7157705 7161928 Lele28g1104 28 7157705 7161928 ECH
Lele25g1111 25 7179707 7184321 Lele28g1104 28 7157705 7161928 hybridization
Lele26g1111 26 7177548 7181745 Lele28g1104 28 7157705 7161928 hybridization