Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1100 ATGGTTTCTAATAAACAGCACAAGAGAGAAGCTCTGCATGAGAAGCTTCGACTCCTTCGTTCTATTACTAACTCTCATTCTCTAGACAAAACCTCGATCATATTGGACGCAACAAAGTACATCGAAGAGCTAAAGCAAAAGGTAGAAAGACTGAATCAAGACATAGCCACTGCAGAAACTTCAAGAGACCAAAATCATCTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGATTCCTCATAAATATATATGCAGCCAATAGTTGCCCGGGCCTGCTAGTTCCCATATTGGAGGTGTTCGAAGAGATGGGTCTCAGAGTTATGGAAGCTAGGGTTTCATGTTCAGACACTTTCCGATTTCAGGCAGTAGGAGGAGAAGAAGAAGACGAAGGTGATAGCATGGATGCAGAAACAGTGACACAGGCAGTGGGAAGAGCCATAAAGAATTGGAGAGAGAGTACGAGTCAACATCTCATCGATGAAAGCTTCAACGACGTTAAAGCTTTAGTGAAGACAAAGAAAGCTTCATCGATGACGATATCGCAGCTCCCCAAATTTCCTTTGCTACCTGCCATTGTCTGTGGTTCGGAAACCCCCTTCTCAATTTCTTTTGCGTGGCATCCTGCCTTCGCCAATGGATGGCCCACTGTCCGTCTGAGCGCCGCCGATTCTAAGAGTCTGTACTAG 687 0.4498 MVSNKQHKREALHEKLRLLRSITNSHSLDKTSIILDATKYIEELKQKVERLNQDIATAETSRDQNHLPMVTVETLEKGFLINIYAANSCPGLLVPILEVFEEMGLRVMEARVSCSDTFRFQAVGGEEEDEGDSMDAETVTQAVGRAIKNWRESTSQHLIDESFNDVKALVKTKKASSMTISQLPKFPLLPAIVCGSETPFSISFAWHPAFANGWPTVRLSAADSKSLY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1100 228 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 153 - -
Lele28g1100 228 Coils Coil 34 61 - -
Lele28g1100 228 CDD ACT_UUR-ACR-like 80 147 - -
Lele28g1100 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 63 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1100 Lele-ChrLele28 7133272 7138483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1100 12 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.767 9.40e-10 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1108 26 7166030 7169032 Lele28g1100 28 7133272 7138483 CCT
Lele27g0970 27 17487579 17488264 Lele28g1100 28 7133272 7138483 CCT
Lele28g1101 28 7146717 7149687 Lele28g1100 28 7133272 7138483 CCT
Lele25g1107 25 7153415 7160410 Lele28g1100 28 7133272 7138483 CCT
Lele27g0971 27 17498787 17507618 Lele28g1100 28 7133272 7138483 ECH
Lele41g0225 41 1839189 1840569 Lele28g1100 28 7133272 7138483 ECH
Lele42g0219 42 1839556 1841011 Lele28g1100 28 7133272 7138483 ECH
Lele43g1139 43 19745146 19746519 Lele28g1100 28 7133272 7138483 ECH
Lele44g1127 44 19894749 19896676 Lele28g1100 28 7133272 7138483 ECH
Lele01g1015 01 5882328 5883424 Lele28g1100 28 7133272 7138483 ECH
Lele02g1030 02 6343401 6344516 Lele28g1100 28 7133272 7138483 ECH
Lele03g1016 03 5890967 5892075 Lele28g1100 28 7133272 7138483 ECH
Lele04g1019 04 6316093 6317161 Lele28g1100 28 7133272 7138483 ECH
Lele28g1100 28 7133272 7138483 Lele28g1100 28 7133272 7138483 ECH
Lele25g1107 25 7153415 7160410 Lele28g1100 28 7133272 7138483 hybridization
Lele26g1107 26 7155072 7156282 Lele28g1100 28 7133272 7138483 hybridization