Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1098 ATGGATTGCTCTGTATGCACAACAATGCCATTGATATTAAGGCCACCAAGGAACACCATATGTGGGGCCTGTTATGAAGGAGCCAGGAGCATTCTGAATATGATGAACAAGCTTGAATCTGATAGATCAATGGATAATCCTAATGCTTCTCCAGCTTCACCCTCCCATAATTCGACATTTAAAAAATGGTATACACAGCAGTTAGATCAGATGAATGAACATAAACACCAAGTAGCCTTCCTTGAAAGCTTTGTTGATGCATTCAGAGCACAAACTCACACTGATATAACTGTCACTCCTGGCAATAAAGGCCCTCCAATACCTTCCCATAAAGCAGTTTTGGCGACAAGGTCAGAGGTTTTCAAGAACATGTTAGATTCAGATGAATGCAAAGCTGCACCAACTAACAACATTACAATACCTGAATTGAACTACGAAGAGCTAGAGAATCTTCTGGAGTTTCTCTACAGAGGGAACTTGGGTCCAGAAAAATTGGGGAAGCATGTATTTGCCTTGTCACTCGCAGCTGATAAATATGGGATTGCTTATTTACAGCAGCAATGCGAGCAGCATATGCTGAATTCACTAAGCATATCGAATGCGCTTGATGTGTTGGAAATTGCAGACACATGTTCCAACCAGAAGTTGAAGGACACTGCTATGAAGTTCTCAGTTGAAAACATTCAGGACATAGTTTTGTCCTCAAGATATGAGGTATTTGTGCACAGAAGCCCCCATTTAACTGTGCAACTTTCCAGGGAATTATTGAAGGTTGTCAATGTCAAATGA 789 0.4094 MDCSVCTTMPLILRPPRNTICGACYEGARSILNMMNKLESDRSMDNPNASPASPSHNSTFKKWYTQQLDQMNEHKHQVAFLESFVDAFRAQTHTDITVTPGNKGPPIPSHKAVLATRSEVFKNMLDSDECKAAPTNNITIPELNYEELENLLEFLYRGNLGPEKLGKHVFALSLAADKYGIAYLQQQCEQHMLNSLSISNALDVLEIADTCSNQKLKDTAMKFSVENIQDIVLSSRYEVFVHRSPHLTVQLSRELLKVVNVK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1098 262 CDD BTB_POZ_ZBTB_KLHL-like 93 141 - -
Lele28g1098 262 Pfam BTB/POZ domain 88 195 IPR000210 GO:0005515
Lele28g1098 262 ProSiteProfiles BTB domain profile. 94 164 IPR000210 GO:0005515
Lele28g1098 262 SUPERFAMILY POZ domain 72 194 IPR011333 -
Lele28g1098 262 Gene3D - 197 260 - -
Lele28g1098 262 Gene3D Potassium Channel Kv1.1; Chain A 62 196 IPR011333 -
Lele28g1098 262 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 258 IPR044784 -
Lele28g1098 262 CDD BACK 197 257 - -
Lele28g1098 262 SMART BTB_4 94 196 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1098 Lele-ChrLele28 7129832 7130828 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele28g1098 BTB 7.5e-21 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1098 28 7129832 7130828 Lele25g1104 25 7149221 7149722 CCT
Lele28g1098 28 7129832 7130828 Lele27g0973 27 17511262 17511763 CCT
Lele28g1098 28 7129832 7130828 Lele28g1097 28 7127064 7127567 CCT
Lele28g1098 28 7129832 7130828 Lele28g1098 28 7129832 7130828 ECH
Lele25g1106 25 7152162 7152858 Lele28g1098 28 7129832 7130828 hybridization
Lele26g1104 26 7144459 7145464 Lele28g1098 28 7129832 7130828 hybridization