Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1070 ATGGCTCGCCTACTGCTAAGCGTAGATTTAACCTCAACCCCATCAGGTAATGGCAACAGAACAGGAGGGTTTAACACTAGCGATGCCAATTTTGACACAAATATGGTGATTATACTAGCAGCCTTGCTCTGTGCACTAATATGTGCTTTAGGGCTAAACTCAATTGTGAGATGTGCTTTGAGATGCAGCAGCAGGTTTGCTTTTGAGACACCAGATGAAGCTGCAGCTCGTGTAGCAGCAAAAGGGTTGAAGAAGAGTGTACTGCGTCAGATCCCTATAGTTGTATATGGGTCATCAGGTTCTACTGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTAGATGGAGAGAAAATTAGGGTTCTTCCAAAGTGCAACCATGGATTCCATGTGAGGTGCATAGACACATGGCTTCTCTCACATTCTTCTTGCCCTACTTGCAGACAGTCTTTGCTTGATCAACAACATAGTGCAAACACTTCTGGTTCTTCTGTTGATGTATAG 513 0.4405 MARLLLSVDLTSTPSGNGNRTGGFNTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSSRFAFETPDEAAARVAAKGLKKSVLRQIPIVVYGSSGSTDIGATECPICLGEFVDGEKIRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQQHSANTSGSSVDV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1070 170 Pfam Ring finger domain 108 151 IPR001841 -
Lele28g1070 170 SMART FANCL_C_2 105 155 - -
Lele28g1070 170 SUPERFAMILY RING/U-box 108 157 - -
Lele28g1070 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Lele28g1070 170 PANTHER RING-H2 FINGER PROTEIN ATL78 25 164 IPR044602 GO:0016567|GO:0016740
Lele28g1070 170 CDD RING-H2_PA-TM-RING 108 151 - -
Lele28g1070 170 FunFam RING-H2 finger protein ATL72-like 74 155 - -
Lele28g1070 170 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lele28g1070 170 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1070 Lele-ChrLele28 6960230 6960742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1070 1 160 C3H Transcription Factor Family AT3G10910 60.714 4.06e-63 191