Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1065 ATGGCTGCCACTGCTAGTGTAGGCAGAAAGAAACTCATAGTCACGGCTCTCTGCAAACACCTTTCTTTAAATCCAAATATTATTCCATCTGATGGTTTGGAAAGTGATGTCAAGAGTCTTTACTTAAACATCTCAAAGTCATCAGGACATGGGTTCAATGACAGTAACGAGGTGATGAAGTGGGTAGCATTTGCAGAAACTTTCCCTGAAATCCCTGAAGCCTCTTTTGAAGTTCTCAAGGGTTTAAATGACGAACTCTCTGTGAAGTCTGTGCTATTAGGCAATGGTTTGAAACCGTCTGAAGCTGATATTATAGTTTTTTCTGCTGTTCATTCCTCCCTGTTGAAATCTAACAAAGTTTTAATGGGTGCTTATTGCCAGACCACCCTTTCAGAGACGAACAGAGAAAAACTGCCACATGTCTTGAGATGGATGAATTACATTCAGATAGAAAAACCTATAGCAGCTGCTGAAGCTGATTCAAAAGAATCAAAAGCAAAAAAGAATGAGCAAAGCACTAAGAATGTAAACAAACCAGAAAAAGAAGAAAAGGTAACAGGAGACAAGGATGCTGCTAAAGGTAATACAAAACCTGTTCAAACAGAAGCGCCGGAGAAAGATAAAGAACTTAGTGTCAGTTTGCTAAATATTCAGGTCGGACTAATTCGTAAAGCATGGAAGCATCCAACAGCTGATAGTCTGCTAGTCGAGGAGATAGATGTTGGGGATGCCAAATTGCGGCAAGTTGTCAGTGGATTGGCAAAGTTTTGTAGCCCTGAAGAGTTGACGAACCGTCGTGTTGTACTTATTACAAATGTCAAGCCTGGAAAACTACGAGATGTTATGTCAGAGGGACTGGTCTTATGTGCTTCTAATGAAGATCATACTGTTGTCGAGCCCTTGCTTCCTCCAGAAGGGGCTAAAATTGGAGAGCGTGTTTTATTTTCCGGGATTGATGGGAAGCCAGAAGATGTACTTAACCCAAAGAAGAAACAGCTGGAGAAGATTACACCGAATCTCTTCACTGATGAAAAGGGTGTCGCCACTTTCAAGGGAATACCTTTTATGACGTCAGTCATAATCCAATACTACACAGAAGCTAAGGAGATTGTGATGTGGTTGGATGATATGCTGCACTTGGATTTTATTCTCCAGCTTATGACGCTGTCCTCCCTGCAAATTTTTTTATTCTCTCCAGCTGTGAAGGTCAGCAAAATTGACAGTCTGATTTTGATTTTCTTTAAGCAAAGAACATCTCAGAATGAAGCAGAACACCCCCCCTCCTCCTCTATTTATTATGTGTTTCTAAGATTCAAAAAACGTATGGCTTCTTCTTCCTCTTCCTCTTCCTCATCAAATTGGGCCATGGAAAATGGAGTTATTCCCCATGTTCTAGCTGTTGATGACAATCTCATTGACCGCAAACTCGTTGAGAAGCTCCTCAGAAATTCTTCTTGCAAAGTGACAACTGCGGAAAATGGACCGAGGGCATTGGAGCTTCTGGGGTTGGCAAGTGATGAAGAAAACACCATGAAGGGCACAGGATCCAAAGTGAATATGATTATCACAGACTATTGTATGCCAGGGATGACAGGATATGAACTACTCAAGAAAATAAAGAAATCATCAATCATGAAGGAGGTTCCAGTGGTGATCATGTCATCTGAGAACATCCCAACTAGGGTGAACAAGTGTTTGGAAGAAGGTGCTCAGATGTTCATACAAAAACCCCTCAAACAATCCGATGTAAAGAAGCTGACATGTCAACTGATGAATTGCAGAGGCTAG 1788 0.4128 MAATASVGRKKLIVTALCKHLSLNPNIIPSDGLESDVKSLYLNISKSSGHGFNDSNEVMKWVAFAETFPEIPEASFEVLKGLNDELSVKSVLLGNGLKPSEADIIVFSAVHSSLLKSNKVLMGAYCQTTLSETNREKLPHVLRWMNYIQIEKPIAAAEADSKESKAKKNEQSTKNVNKPEKEEKVTGDKDAAKGNTKPVQTEAPEKDKELSVSLLNIQVGLIRKAWKHPTADSLLVEEIDVGDAKLRQVVSGLAKFCSPEELTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTVVEPLLPPEGAKIGERVLFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSVIIQYYTEAKEIVMWLDDMLHLDFILQLMTLSSLQIFLFSPAVKVSKIDSLILIFFKQRTSQNEAEHPPSSSIYYVFLRFKKRMASSSSSSSSSNWAMENGVIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLASDEENTMKGTGSKVNMIITDYCMPGMTGYELLKKIKKSSIMKEVPVVIMSSENIPTRVNKCLEEGAQMFIQKPLKQSDVKKLTCQLMNCRG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1065 595 MobiDBLite consensus disorder prediction 158 207 - -
Lele28g1065 595 Gene3D - 211 371 IPR012340 -
Lele28g1065 595 Pfam Response regulator receiver domain 464 585 IPR001789 GO:0000160
Lele28g1065 595 SUPERFAMILY CheY-like 463 591 IPR011006 -
Lele28g1065 595 PANTHER TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER 38 358 - -
Lele28g1065 595 SUPERFAMILY GST C-terminal domain-like 49 149 IPR036282 -
Lele28g1065 595 Gene3D - 461 593 - -
Lele28g1065 595 ProSiteProfiles tRNA-binding domain profile. 211 314 IPR002547 GO:0000049
Lele28g1065 595 SMART REC_2 462 587 IPR001789 GO:0000160
Lele28g1065 595 ProSiteProfiles Response regulatory domain profile. 463 591 IPR001789 GO:0000160
Lele28g1065 595 CDD REC_typeA_ARR 464 586 - -
Lele28g1065 595 Pfam Putative tRNA binding domain 217 311 IPR002547 GO:0000049
Lele28g1065 595 SUPERFAMILY Nucleic acid-binding proteins 213 357 IPR012340 -
Lele28g1065 595 MobiDBLite consensus disorder prediction 158 191 - -
Lele28g1065 595 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 210 370 - -
Lele28g1065 595 CDD tRNA_bind_EMAP-II_like 210 314 - -
Lele28g1065 595 Gene3D - 39 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1065 Lele-ChrLele28 6908289 6917925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1065 447 594 Response Regulator Gene Family AT3G56380 68.456 3.60e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele28g1065 Response_reg 4.1e-21 CL0304