Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1062 ATGTTCTTGCATTGCGAGAGGTCGAAATCAAAAGAAAGGGGGAAGAAATCAAGGAGTTACATGAGGTGTACTCGCAAGTATGAACAAGGTTGTCGGGCAGGGAAGCAGGTGCAGCTAATCGAAGAGAAACCTGAGCTCTATCAGATTATGTACATCGGAGATTACACATGTAAAGACATCCTCAAGACACCCCAAGTGGTCACAGGTTCTGGTAATAATTTGGAATCATTCTTCGCTGCAGATTCAAAGCTTCCATCGACCGAAGTAAATAATAAGGTGCATCATCATCCCATGAAGCAAGAGCGTCGTCGTCGTCCCAACGAGGAGACACCGAGTGATGACTTCACCGACAGCGGCTTCGACCCTAGTTTGTGGTCGGATCTGAAAGATCTCTCTGAGGCTGCAATAATTCCTTAA 417 0.4604 MFLHCERSKSKERGKKSRSYMRCTRKYEQGCRAGKQVQLIEEKPELYQIMYIGDYTCKDILKTPQVVTGSGNNLESFFAADSKLPSTEVNNKVHHHPMKQERRRRPNEETPSDDFTDSGFDPSLWSDLKDLSEAAIIP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1062 138 Pfam WRKY DNA -binding domain 12 58 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1062 138 Gene3D WRKY domain 7 59 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1062 138 SMART WRKY_cls 9 59 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g1062 138 SUPERFAMILY WRKY DNA-binding domain 13 58 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g1062 138 MobiDBLite consensus disorder prediction 86 138 - -
Lele28g1062 138 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 95 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1062 Lele-ChrLele28 6894107 6895475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1062 18 108 WRKY Transcription Factor Family AT3G56400 37.363 1.78e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele28g1062 WRKY 2.5e-08 CL0274