Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1059 ATGACGCTTTCCACCAGCTGTTTTGGGGTCAGTAACCCCATTCCCATATCTGGAAAACCCGATTTGGAAAACCAAGAACCCCAATCCGATGACCCTCAGTCGCTTGTGGTGGTGTCCTTCTACAAGTTTGCGGATTTTCCTGACCATGCCAACCTGCGGAAACCCTTGAAGGCACTCTGTGAAGAACTGCGCGTTTCAGGGGGTATCATTCTTGCGCCTGAAGGAACCAATGGCAGCATATGTGGCACTCGCGAGTCGGTGGAGAAAGTTCTTGCGTTTATACGAAGTGATAACCGTCTTAAGGGTCTAAGACAAGTGGAATCACCTGTGAGTCCTGAGGAAGAAGCTATTCATCACGGACATAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCACCTTTCCGATGGGATCATGTGAGGGTTAAGTTGAAGAAAGAGATTGTTACGCTTGGGATGCCTGCTGTATCACCTATTGAAAGGGTTGGAAAGTATGTGAGCCCCAGAGATTGGAATACACTGATTAGTGATCCAGATATAGTGGTGATTGATGTGCGGAACGATTATGAAACCAGGATAGGAAAGTTTAAAGGAGCAGTTGATCCACGCACAACATCATTTCGTGAATTCCCTTCCTGGGTGGGGGATCATTTTGAGCTTACTAGAAACAAGGGCAAGCCTGCAATAGTTGAGGGAAACAATTCAGGTGAAAGTGTAGAAAGGGATACAAAAAATCCGGAACATATGCCACGTGTTGCAATGTATTGCACCGGAGGTATTCGATGTGAAAAAGCTTCAAGTTTGCTCCTCAGTCAAGGTTTCAAAGAGGTGTATCACTTGGAAGGTGGAATTCTGAAATATCTGGAGGAAGTACCAAAAACAGAAAGCCTATGGCAGGGTGAGTGCTTTGTGTTTGACAAACGAGTCTCTGTGGAGCATGGTTTGGTTCAAGGAAATTTCAAGCTATGCTATGGTTGTAAGCAGCCTGTGAGTGATGCTGATATGGAAGCTCCGGAATTCGAATACGGAGTTTCTTGCCCACATTGTTTTTCCCAGAAATCAGAGGAAGAGAAGGAGAGGGCACGAGCTAGGCAAAGACAGTTTGAGAGATGGGGAATCATAGGCGGTCCGGATAATGGTCGGCGACCAACATGTAAACCAGATGGTGGCAGTAGGAAATCTGACAAGCTTTCACGTTCAATTTAA 1206 0.4627 MTLSTSCFGVSNPIPISGKPDLENQEPQSDDPQSLVVVSFYKFADFPDHANLRKPLKALCEELRVSGGIILAPEGTNGSICGTRESVEKVLAFIRSDNRLKGLRQVESPVSPEEEAIHHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPAVSPIERVGKYVSPRDWNTLISDPDIVVIDVRNDYETRIGKFKGAVDPRTTSFREFPSWVGDHFELTRNKGKPAIVEGNNSGESVERDTKNPEHMPRVAMYCTGGIRCEKASSLLLSQGFKEVYHLEGGILKYLEEVPKTESLWQGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFSQKSEEEKERARARQRQFERWGIIGGPDNGRRPTCKPDGGSRKSDKLSRSI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1059 401 Pfam Rhodanese-like domain 173 289 IPR001763 -
Lele28g1059 401 MobiDBLite consensus disorder prediction 1 30 - -
Lele28g1059 401 MobiDBLite consensus disorder prediction 385 401 - -
Lele28g1059 401 Hamap tRNA uridine(34) hydroxylase [trhO]. 33 333 IPR020936 -
Lele28g1059 401 SMART rhod_4 166 293 IPR001763 -
Lele28g1059 401 Gene3D - 150 331 IPR036873 -
Lele28g1059 401 Gene3D - 23 149 - -
Lele28g1059 401 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 145 322 IPR036873 -
Lele28g1059 401 CDD RHOD_YceA 163 289 - -
Lele28g1059 401 ProSiteProfiles Rhodanese domain profile. 176 296 IPR001763 -
Lele28g1059 401 Pfam UPF0176 acylphosphatase like domain 36 148 IPR040503 -
Lele28g1059 401 MobiDBLite consensus disorder prediction 107 128 - -
Lele28g1059 401 MobiDBLite consensus disorder prediction 357 401 - -
Lele28g1059 401 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 24 365 IPR020936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1059 Lele-ChrLele28 6868321 6871053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1059 23 401 Sulfurtransferasese or Rhodanese AT2G40760 75.718 0.0 590
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1059 25 6847376 6850885 Lele28g1059 28 6868321 6871053 hybridization
Lele26g1066 26 6890434 6894311 Lele28g1059 28 6868321 6871053 hybridization