Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1048 ATGAAGAGTAGTCGCATGGAGGAGGGAGGAACCATGGATGGAACCCTTGATCAAGGACCAGCAAGGTGTTACAGGCAAATTAAAAACAAACCTTACCCAAAATCACGCTTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGGATGAAAAAGAAAGGCGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAAGAAAACGTTTCAAGTGAGGCTCTGGAAGCTGCTCGGATTGCATGCAACAAATACATGGCTAAATTCGCTGGAAAGGATGCATTCCACTTGAGGGTCAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGCGCTGGAGCTGATAGGCTCCAAACAGGAATGAGAGGTGCATTTGGAAAGCCCCAAGGAACATGTGCTAGAGTGGCCATTGGTCAGGTTCTGCTTTCTGTTCGCTGCAAGGATGGCAACAGCCATCATGCTCAGGAGGCCCTCCGTCGTGCTAAGTTCAAGTTCCCTGGCCGCCAAAAGATCATTGTTAGCAGAAAATGGGGTTTCACCAAATTTAGCCGCACTGACTATGTGAGGTTCAAGTCAGAGAACAGGATCGTGCCAGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCTTTGGCTAACCGTCAGCCTGGAAGAGCCTTTCTGCACGCAACTTCTTAG 708 0.4732 MKSSRMEEGGTMDGTLDQGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDGNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYVRFKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLHATS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1048 235 ProSitePatterns Ribosomal protein L10e signature. 123 144 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 CDD Ribosomal_L16_L10e 56 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 TIGRFAM uL16_euk_arch: ribosomal protein uL16 19 189 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 FunFam 60S ribosomal protein L10 16 221 - -
Lele28g1048 235 Gene3D Ribosomal protein L10e/L16 18 232 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 Pfam Ribosomal protein L16p/L10e 27 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 PANTHER 60S RIBOSOMAL PROTEIN L10 19 228 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele28g1048 235 SUPERFAMILY Ribosomal protein L16p/L10e 20 188 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1048 Lele-ChrLele28 6816018 6821563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1048 20 235 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.037 4.56e-142 394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0124 02 724859 731086 Lele28g1048 28 6816018 6821563 CCT
Lele03g0127 03 712995 715729 Lele28g1048 28 6816018 6821563 CCT
Lele25g1049 25 6802125 6804521 Lele28g1048 28 6816018 6821563 hybridization
Lele26g1056 26 6845700 6848214 Lele28g1048 28 6816018 6821563 hybridization