Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1047 ATGGGAACCTCAGGGCTTGATGAGACAGATCAACGCACCATTTCTTCATCTTCGTCTTCTGCCGGAGTTGTAAATACGACTGATGGTAACAACAACACTGCCAGTACTGGAAGTGTAACGTGGTATGGGGTGCGGTTGCCTTCTCCCCTCTCTTTTTTACTGGATTACTCTGACCGTCTTCGCTCGAGCTCGTCAATCGGCTATTATGAGTCTGTAATTGACAACAACAACGAAGCTACCGCTCCTGAATTACAACCGGACCGTCAAGCTTCTTCTTTAGATTCTTCTGCTGTAACCATTTGCAGTGGCCGCAGCAGCGAGAGCAGTTCAGGGGAAGTTGCGATACGAATTGGTGGAGGGGTCGAACGGAATCACAATGCAGGGTTGGGTTCTGTTTCGTCAGCATCCCAAAATCAGTCCGTAGACGATGATGATTTAATGGGAAATAAAGGTGGAATGCCTGTTCTGAATGAGGATGCTGAGGGTAGCAGTGGAATTATGGCTAGTGAGAGAGCTCCTCTAGTGCCCTCATCATCGTCTATGGCAGGTAGTACTAGTGGACAAGATGATATTGATGCTGGGAATGGCTTTGAAAGTAATCTTCGGGGTTTATCGTCTCATGAAAGTAATGATTTTCAGCAACTTGCTAAATTGCTTGAGCAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTGCAAGGTTTCATCATCACAATTTGGATTTCAATTGTGATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACATCTCTAAAGGGAAATAGGAAAGTCTCAGTTCTCGTCGGTATCTCATCCGTCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCAGGATGATGATCTTTTATACTCACCACTGATCTTGCTCCCTCCAAAAGCAACACCTCATTTCTGGCATGCAATATTCATCGTTCTGATTAACGATGTACTTGTGCGGCAAGCAGCGATGTCTTTCAAGTGCTTGCTACTTGTATATTTCAAGAATGACCGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTGGAGCACGCGCTGCTGCTGTACCGTAACTTGTTGCCAGCGCCTGTTTGGTACTGGTTTTTCCTAAACAGGGAATATGGAAGTCTCTTTTCGTCGCTGACCACGGGCTTGTACCTAACCTTCAAGTTAATGTCTATTGTTGAGAAGATCCAATGCTTCTTTTCCGCCTTAAAAGCATTATCCGGCAAGGATATTCTCTATGGCGTATATGCTACAAAGGAACAGGTAAATGCCGCGGGCGACCTTTGCGCTATATGCCAAGAGAAGATGCGCGGTCCTATCTTGTTGCGCTGTAAACACATTTTCTGTGAGGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGTCCACTATGTAGAGCATTGGTGAAGGCCGGGGATATTCGATCTTTCGGCGATGGATCGACAAGTCTGTTCTTCCAGCTATGTTAA 1509 0.4533 MGTSGLDETDQRTISSSSSSAGVVNTTDGNNNTASTGSVTWYGVRLPSPLSFLLDYSDRLRSSSSIGYYESVIDNNNEATAPELQPDRQASSLDSSAVTICSGRSSESSSGEVAIRIGGGVERNHNAGLGSVSSASQNQSVDDDDLMGNKGGMPVLNEDAEGSSGIMASERAPLVPSSSSMAGSTSGQDDIDAGNGFESNLRGLSSHESNDFQQLAKLLEQVLPFSLLLLVVFIRQHLQGFIITIWISIVMFKSNEMVKKQTSLKGNRKVSVLVGISSVFMLHVMCIYWWYQDDDLLYSPLILLPPKATPHFWHAIFIVLINDVLVRQAAMSFKCLLLVYFKNDRGHSFRLQAQILTLVEHALLLYRNLLPAPVWYWFFLNREYGSLFSSLTTGLYLTFKLMSIVEKIQCFFSALKALSGKDILYGVYATKEQVNAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1047 502 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 501 IPR044235 GO:0061630|GO:1904294
Lele28g1047 502 MobiDBLite consensus disorder prediction 173 192 - -
Lele28g1047 502 MobiDBLite consensus disorder prediction 126 192 - -
Lele28g1047 502 MobiDBLite consensus disorder prediction 87 112 - -
Lele28g1047 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 488 IPR013083 -
Lele28g1047 502 SMART ring_2 441 478 IPR001841 -
Lele28g1047 502 CDD RING-HC_RNFT1_like 440 479 - -
Lele28g1047 502 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Lele28g1047 502 Pfam Zinc finger, C3HC4 type (RING finger) 439 482 - -
Lele28g1047 502 MobiDBLite consensus disorder prediction 1 39 - -
Lele28g1047 502 MobiDBLite consensus disorder prediction 127 144 - -
Lele28g1047 502 ProSiteProfiles Zinc finger RING-type profile. 441 479 IPR001841 -
Lele28g1047 502 SUPERFAMILY RING/U-box 435 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1047 Lele-ChrLele28 6799985 6814114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1047 88 501 C3H Transcription Factor Family AT5G01960 57.971 1.04e-170 486