Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1005 ATGAGTGGTCGCTTTTCTCGCACTATTTATGTTGGCAACCTGCCCTCAGATATAAGAGAATCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATCGAGTTAAAGATTCCGCCTCGACCTCCATGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCGCATGGTGGTAGGGGGCCATCATCAAGTGATCGGCGTGGTTATGGTGGCAGTGGGAGCCGTTTTGGCATGTCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGGAAAGCTGGCGATGTATGTTTTGCTGAGGTTTCTCGTGATAGTGAAGGTACATTTGGCATTGTTGATTACACTAATTATGACGACATGAAATATGCTATTCGGAAACTTGATGACACCGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCAGGAGCCCTGGCAGAAGCAGGAGTCCTAAAAGGAATAGAAGTAGGTCATTGGAGCGATCTGTATCCAGGTCACCATCTAGGTCTAGATCGCCATCACCAATCAAATCTAGGCCAAGATCGCCATCACGGTCACGATCTCGGTCACAATCTGGATCACCATGTCAGGCTCGGTCTGCCAGTGGTTGA 768 0.4622 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGSRFGMSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSPGRSRSPKRNRSRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSQSGSPCQARSASG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1005 255 CDD RRM2_SF2_plant_like 109 184 - -
Lele28g1005 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Lele28g1005 255 CDD RRM1_SF2_plant_like 8 79 - -
Lele28g1005 255 MobiDBLite consensus disorder prediction 186 255 - -
Lele28g1005 255 FunFam serine/arginine-rich splicing factor SR34A-like 2 108 - -
Lele28g1005 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lele28g1005 255 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Lele28g1005 255 FunFam serine/arginine-rich splicing factor SR34A-like 109 186 - -
Lele28g1005 255 SMART rrm1_1 110 179 IPR000504 GO:0003723
Lele28g1005 255 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lele28g1005 255 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 241 - -
Lele28g1005 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
Lele28g1005 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lele28g1005 255 Gene3D - 2 108 IPR012677 -
Lele28g1005 255 MobiDBLite consensus disorder prediction 217 255 - -
Lele28g1005 255 Gene3D - 109 186 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1005 Lele-ChrLele28 6551946 6554584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1005 9 171 Eukaryotic Initiation Factors Gene Family AT4G34110 25.444 1.25e-08 53.5