Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1004 ATGGCTGTTGCTGAGAATGTTGGTGCCATAATCGACTCTTCCGGTGAAAATTTGGAAAACCGCGTAGTATCCTCTGACTCAACTGTACCTAATGAACTGGAGAAATCGAAGCTCAAACCGGGTTCCATGGGAAATGGTATAGAAACTAATGTTCAGGCCGTCAATAGTGATCAGAATCTGAACGCTGTCTTCAACAACAAAGACATCGTTTCGACTACTATATCAGTCCCCAATAATAACTATACAGCTCAGATGGCTCAGATGCGAAATGGATTTGAAGAAAATGGGGTCCAGACTCAACAGATGGTAATGAACAATGGTGGATATGGCATCAACCAGATTTCTAATGGGGTGAGAAATGGTGGAGACGACAATGGTGAAAGTTTCAAGCGAGATATGAGGGATTTGGCGGAACTATTATCGAAGTTGAATCCTATGGCTGAAGAATTTGTGCCCCCATCGCTTACTAAGAATCATGGGATCTTAGGCGGTGGGGGAGGATTTGGCTACCCTAACAATTTTCTATTACAGGCTAACATCAGCAATGCCAATGGTCAAATTAACAGAAGGAGGAAGAATGGCTATAATCAGGGTAAGAGAAGAATGAATCATAAAATGGATGTGGAAAAGAGAGAAGAGATGATAAGAAGGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCGGCTCTGTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGAGTATGTGGGGATCCAAATTCCATTCTTCGTTTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCTAGGGCTGCTTTGAATCTATCTGGCACTATGCTTGGGTATTATCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCGGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGTTCAAGAACCATTTATTGCACAAATGTTGACAAAAAGGTTACTCAGGCAGATGTCAAACTCTTCTTTGAGTCTCTCTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGTGATTATCATCATTCAACTCGAATTGCATTTGTTGAGTTCATGATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGCGGTGTGATTTTGGGATCACTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGTTCTCGCACACCTCGTTCTCATATGCACTGA 1209 0.4318 MAVAENVGAIIDSSGENLENRVVSSDSTVPNELEKSKLKPGSMGNGIETNVQAVNSDQNLNAVFNNKDIVSTTISVPNNNYTAQMAQMRNGFEENGVQTQQMVMNNGGYGINQISNGVRNGGDDNGESFKRDMRDLAELLSKLNPMAEEFVPPSLTKNHGILGGGGGFGYPNNFLLQANISNANGQINRRRKNGYNQGKRRMNHKMDVEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNVDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRTPRSHMH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1004 402 Gene3D - 301 398 IPR012677 -
Lele28g1004 402 Gene3D - 178 294 IPR012677 -
Lele28g1004 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
Lele28g1004 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Lele28g1004 402 SUPERFAMILY RNA-binding domain, RBD 187 293 IPR035979 GO:0003676
Lele28g1004 402 SUPERFAMILY RNA-binding domain, RBD 305 395 IPR035979 GO:0003676
Lele28g1004 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 390 IPR000504 GO:0003723
Lele28g1004 402 MobiDBLite consensus disorder prediction 21 44 - -
Lele28g1004 402 Pfam Ataxin-2 C-terminal region 140 154 IPR009818 -
Lele28g1004 402 SMART rrm1_1 218 288 IPR000504 GO:0003723
Lele28g1004 402 SMART rrm1_1 315 386 IPR000504 GO:0003723
Lele28g1004 402 FunFam Polyadenylate-binding protein-interacting protein 11 181 294 - -
Lele28g1004 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 292 IPR000504 GO:0003723
Lele28g1004 402 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 138 396 - -
Lele28g1004 402 CDD RRM2_CID8_like 310 391 IPR034825 -
Lele28g1004 402 CDD RRM1_CID8_like 215 294 IPR034823 -
Lele28g1004 402 FunFam Polyadenylate-binding protein-interacting protein 10 308 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1004 Lele-ChrLele28 6542632 6547284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1004 216 378 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 2.21e-10 60.1