Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1003 ATGTCACAGCAGAGGCAAAATAGGATGATGATGAATAATCCAAGCAATGCAAAACAAGTTGGTGACACGACCTATACGAAGATCTTCGTTGGAGGGTTGGCTTGGGAGACTAAAAGAGACTCTCTGGAACGCTACTTTGAGCAGTACGGGGAGATCTCTGAGGCGGTTGTTATCACTGACAGAAACACTGGAGCTTCCAAAGGCTATGGCTTCGTGACTTTCAAGGATCCTGAATCTGCAATGAGAGCTTGTCAGAATCCATATCCTTTGATTGATGCCAGGAGGGCTAATTGTAATCTTGCAGCTCTTGGTGCACGCAAATTCAACCCATCTTCTACCTCAGGAGCTGAGAAAATCAACAATACCAATTCATGGACTTTGGGACCAATCCCATTTCAAGGCTCCTCTTCATATTACAATCCGCACACACCCCATTACACTTTTCCCTTTCCACCACCCTATAGGTATCCTGGTTATCCTCCTTCACAAGAAATCTATGCAATGAACTACTATAATGTTTATGGAGGGCAACAAGTTCCATTCCGATGGCGTCCTGCAATATACCAACCGTTTTATGGGGCTAGTAGTAATTCAATGAGATTGCCAGCAGAAGCAATGGGGAAGAAGACGACACAGTACTCTGATGTACCCCCACCCCAGGAAATTTTCTCATTTGTTGGAGTTCCACCAGAACCTATTTCAGTTTCTTCTTCAATACCCACCTCTGGAATAGTGACAGCAACAGTTTCTGGAGCATCCCCTGAACACAAATCTTCTTCAGCTTAG 786 0.4453 MSQQRQNRMMMNNPSNAKQVGDTTYTKIFVGGLAWETKRDSLERYFEQYGEISEAVVITDRNTGASKGYGFVTFKDPESAMRACQNPYPLIDARRANCNLAALGARKFNPSSTSGAEKINNTNSWTLGPIPFQGSSSYYNPHTPHYTFPFPPPYRYPGYPPSQEIYAMNYYNVYGGQQVPFRWRPAIYQPFYGASSNSMRLPAEAMGKKTTQYSDVPPPQEIFSFVGVPPEPISVSSSIPTSGIVTATVSGASPEHKSSSA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1003 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele28g1003 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lele28g1003 261 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele28g1003 261 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lele28g1003 261 Gene3D - 1 116 IPR012677 -
Lele28g1003 261 PANTHER BOULE-RELATED 14 229 IPR037366 -
Lele28g1003 261 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1003 Lele-ChrLele28 6538738 6539944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1003 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 1.75e-15 73.9