Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1000 ATGCATGCTTGCAGAAACATGATGAAGTCATTACATATTCCTCTCTCATTATTCCTAGTCCTAATTTCCCTCCAACTAATTCACTTTCATGGCATCCTCTGTGATGACAAAGATGCCCTTCTTTCATTCAAATCCCAGGTCACTGACCCACAGAATTCTCTTTCTACCTGGAATTCTAATTCCTCCGTCTGCTCTTGGCATGGAGTCTCCTGCTCCTCCAAAAACACCAACAGAGTTCAATCTCTTCGTCTACCAGGACTTGCCCTTTCTGGTAATCTACCCTCTTCACTCTTTAACCTCACTTCTTTACAATTTCTTGATCTTTCCAATAATGCATTCCAGGGTCATCTTCCTTTGCAGCTCTCAAATCTTTCTAATCTTAATGTCATAAATTTAGCTGCAAATAATCTCAGTGGAACACTTCCTTCCCAATTATCCCTTCTGCACCAGCTTCAAGTTCTTGACTTCTCTTTGAATAATATCACTGGTCTAATCCCTCCTGAATTTGGAAACTTTTCCGCTCTCACTAATCTTTCCTTGGCAAGAAACCATCTCTCTGGAGAGATTCCCAGTGAGTTGGGAAATCTTCATAATCTTTCTCATCTTCAACTCTCTGAGAACTATTTCTCCGCGGATTTCCCCATTTCTATCTTCAACGTCTCTTCGTTGACCTTCTTATCTGTTACAAAAAATCATCTTTCAGGAAAATTACCGCTACATATAGGCAATTCTCTTCCAAATCTCAGAAGTCTCTATCTGTCAAACAACAAATTTGGGGGAGTGATTCCTATTTCCATATCAAATGCTTCACAGCTCCAAGAAATCGATCTTGCTCACAATGAATTTCATGGAAACCTCCCCTTGTTCAGCAACATGAGAAATCTCACCATGCTCGTTCTTAGTAGTAATAATCTCTCTTCTAGATCATCAGATAATTCCGAGTTCTTTGATTCCCTTAGAAACAGCCCAACGCTGAAAACTCTGAAGATTGACACTAATCACTTAGCAGGGGTGCTACCAAAATCTATAGCAAATCTTTCAACCACTCTTGAACAATTTTGTGTATCCTACAACTTATTCAGTGGAAGCATCCCTCTGGGTATAGGAAAATTTCAAAACCTCATATCCCTATCTTTTGAAGTAAATCATTTCAGTGGGGAGATACCAGGAGACATACGAGCATTGAACAAACTTCAGAACCTTGATATGCACCAAAACCAGTTATCTGGAGAAATCCCAGACATGTTTGGTAATTTCACTCAACTATCCATCCTCTCGTTGAACAATAACAAGTTGTTAGGCAGAATTCCCTCCAGCATTGTGCAGTGCCAAAGATTGAACTATCTTTACCTTCAAATGAATAACCTTCATGGGACCATACCAGAGGGCATTTATAGGCTTTCTAGTTTAACCATCTTGTCCTTAGCAGGGAATACCCTACACGGGTCCCTTCCATTTGCAGTGAGTTCCATGCAGCAACTTCAGTACTTGGACTTGTCTAACAATCTTATGACCGGACAAATTCCAGAATACATAGATGGCCGCGCAAGCTTGCTGATGCTTCAATTGTCAAGAAACAACTTTAGTGGTCCAATACCAAGTACTTTGGGGAACATAACATCATTGGAAACATTGGATCTATCTTCAAACAACCTCACAGGTCCCATACCATCATCTTTGGAAAAGCTTCAGCATTTGGTGAAGTTGAATTTGTCTTTCAACCATTTGGAAGGGGAAGTTCCCCAGAAAGGTGTTTTTACGAACCTTACCCAGCTTAGCCTCCAAGAAAACAGCAAGCTTTGTAGCCCTAACAAAGAAGTTGCGGAAAGATTAAGGATCATTGTATGTGTCAAAGGTAAAAGGCACAACACTAGATTCTTCCTCCCTCTCATACTTGCAGTTACAGGTGCATCTATTTTATGCGTCTCCATCTTCTGCTTCCTGTGCATGAAATGCTTTCGAAAGAGGGATGATAAAACAAGTTTGTCAATTTCTCCTGTCAAGGGAGTTCCACAACAAATATCCTTTTCTGATATTCGAACTGCGACAAACAACTTCGCACCTGAAAACTTGATAGGAAACGGTGGTTTTGGTTTTGTATACAAGGGTGTGTTCAGCATCAACCAACGTGAAACTACTCTTGCTGTGAAAGTACTCGACTTGAAACTGAGTAAGGCTTCTGAGAGTTTCGTTGCAGAGTGTGAAGCTTTGAAGAACGTCAGGCATAGGAACCTCGTGAAGCTCATCACTTCATGCTCAAGTATTGATTATAAAGGTGACGACTTTAAAGCTTTGGTGATGCAATTCATGACCAACGGTAATTTGGACACGTGGTTGTATCAAGTGGACGAAGTATCAGGGTCCACCTTGACCTTCTTGCAGAGATTGAATATTGCTATAGATATTGCTAATGCGATGGAGTATTTACACCATGACTGTGACCCACCAGTAGTCCATTGCGATCTGAAACCTGGTAACATCTTATTGGACGAAACTATGTTTGCCCATGTTGGAGATTTTGGACTTGCAAGGCTTCTTTCTCAGGACCTATTGGAGTCTGTCACTCTAGGACTGAAGGGTACCATCGGCTACATTCCACCAGAATACGGTGTTGGTGGCAAAGCTTCAACCTTGGGAGATGTGTATAGTTTTGGGATTTTAGTACTGGAGATGTTCATAGGGAAAAGGCCAACGGATAAGATGTTCAATGAAGGTTTAAGTCTTGAAAAGTTTGCTGCGACGGCAATGGAAGAGAATCAAATACTGAATGAAGTTGATCCAAAGCTTTTTAACGATTTTGAAAGGTCAACAACACAAAGCTCAAGCACTGGTTATCATAGTGAAGGCAGAAGTAGGAGTGACAACTATAATGGCAGTTTCACAGTGTGCCAGCGCAAAGCAGAGGAGTGCGTAGTTGCAGTGATAAGAGTTGGTTTGTGTTGTGCGGCTCAAGTGGACACAAATCGCTTGACCATGAGAGAGGCCTTGAAAACGTTGCAGGCAATCAGGCACAATCTGCTGGCTATATAA 3030 0.4129 MHACRNMMKSLHIPLSLFLVLISLQLIHFHGILCDDKDALLSFKSQVTDPQNSLSTWNSNSSVCSWHGVSCSSKNTNRVQSLRLPGLALSGNLPSSLFNLTSLQFLDLSNNAFQGHLPLQLSNLSNLNVINLAANNLSGTLPSQLSLLHQLQVLDFSLNNITGLIPPEFGNFSALTNLSLARNHLSGEIPSELGNLHNLSHLQLSENYFSADFPISIFNVSSLTFLSVTKNHLSGKLPLHIGNSLPNLRSLYLSNNKFGGVIPISISNASQLQEIDLAHNEFHGNLPLFSNMRNLTMLVLSSNNLSSRSSDNSEFFDSLRNSPTLKTLKIDTNHLAGVLPKSIANLSTTLEQFCVSYNLFSGSIPLGIGKFQNLISLSFEVNHFSGEIPGDIRALNKLQNLDMHQNQLSGEIPDMFGNFTQLSILSLNNNKLLGRIPSSIVQCQRLNYLYLQMNNLHGTIPEGIYRLSSLTILSLAGNTLHGSLPFAVSSMQQLQYLDLSNNLMTGQIPEYIDGRASLLMLQLSRNNFSGPIPSTLGNITSLETLDLSSNNLTGPIPSSLEKLQHLVKLNLSFNHLEGEVPQKGVFTNLTQLSLQENSKLCSPNKEVAERLRIIVCVKGKRHNTRFFLPLILAVTGASILCVSIFCFLCMKCFRKRDDKTSLSISPVKGVPQQISFSDIRTATNNFAPENLIGNGGFGFVYKGVFSINQRETTLAVKVLDLKLSKASESFVAECEALKNVRHRNLVKLITSCSSIDYKGDDFKALVMQFMTNGNLDTWLYQVDEVSGSTLTFLQRLNIAIDIANAMEYLHHDCDPPVVHCDLKPGNILLDETMFAHVGDFGLARLLSQDLLESVTLGLKGTIGYIPPEYGVGGKASTLGDVYSFGILVLEMFIGKRPTDKMFNEGLSLEKFAATAMEENQILNEVDPKLFNDFERSTTQSSSTGYHSEGRSRSDNYNGSFTVCQRKAEECVVAVIRVGLCCAAQVDTNRLTMREALKTLQAIRHNLLAI 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1000 1009 Pfam Leucine Rich Repeat 541 563 IPR001611 GO:0005515
Lele28g1000 1009 ProSiteProfiles Leucine-rich repeat profile. 541 564 IPR001611 GO:0005515
Lele28g1000 1009 SMART serkin_6 686 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1000 1009 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Lele28g1000 1009 FunFam Inactive leucine-rich repeat receptor-like protein kinase 320 612 - -
Lele28g1000 1009 Gene3D Ribonuclease Inhibitor 227 609 IPR032675 -
Lele28g1000 1009 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Lele28g1000 1009 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Lele28g1000 1009 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Lele28g1000 1009 SUPERFAMILY L domain-like 33 340 - -
Lele28g1000 1009 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 69 319 - -
Lele28g1000 1009 Gene3D Ribonuclease Inhibitor 35 149 IPR032675 -
Lele28g1000 1009 Gene3D Ribonuclease Inhibitor 150 221 IPR032675 -
Lele28g1000 1009 PRINTS Leucine-rich repeat signature 539 552 - -
Lele28g1000 1009 PRINTS Leucine-rich repeat signature 494 507 - -
Lele28g1000 1009 SUPERFAMILY Protein kinase-like (PK-like) 661 1000 IPR011009 -
Lele28g1000 1009 SMART LRR_typ_2 467 490 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 539 562 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 245 269 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 292 318 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 563 588 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 395 418 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 148 171 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 419 443 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 100 124 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 172 196 IPR003591 -
Lele28g1000 1009 SMART LRR_typ_2 491 515 IPR003591 -
Lele28g1000 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Lele28g1000 1009 Gene3D Phosphorylase Kinase; domain 1 667 769 - -
Lele28g1000 1009 SMART LRR_sd22_2 148 180 - -
Lele28g1000 1009 SMART LRR_sd22_2 245 271 - -
Lele28g1000 1009 SMART LRR_sd22_2 292 313 - -
Lele28g1000 1009 SMART LRR_sd22_2 491 514 - -
Lele28g1000 1009 SMART LRR_sd22_2 539 565 - -
Lele28g1000 1009 SMART LRR_sd22_2 395 410 - -
Lele28g1000 1009 SMART LRR_sd22_2 100 126 - -
Lele28g1000 1009 Gene3D Transferase(Phosphotransferase) domain 1 770 1007 - -
Lele28g1000 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 657 769 - -
Lele28g1000 1009 ProSitePatterns Protein kinases ATP-binding region signature. 692 717 IPR017441 GO:0005524
Lele28g1000 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 1009 - -
Lele28g1000 1009 SUPERFAMILY L domain-like 350 604 - -
Lele28g1000 1009 Pfam Protein tyrosine and serine/threonine kinase 690 905 IPR001245 GO:0004672|GO:0006468
Lele28g1000 1009 ProSiteProfiles Protein kinase domain profile. 686 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1000 1009 PANTHER OS04G0122200 PROTEIN 194 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1000 Lele-ChrLele28 6515429 6518534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1000 26 1004 Receptor kinase-like Gene Family AT3G47570 39.432 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lele28g1000 PK_Tyr_Ser-Thr 4.7e-39 CL0016