LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0993	ATGATGGAGGTTGATGAAGAGTATATTCAAGCATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCTTCTCAGAATTCAAGGAAGAAGAACAAACTAGTGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCATTGGAGTGCATATTTAAGTCAGAGTCCAAGTTAGAGCCAAGGAAGAAGATCCAAGTAGCAAGAGATCTTGGGCTGCAACCTCGCCAAGTCGCCATATGGTTCCAGAACAGAAGAGCAAGAGGTAAATCCAAATGGATAGAGCAAGAATACAGGAAGCTCAGAGATGAGTATGATAATTTAGTTTCCGGGTTTGAGTCCCTTAAGAAAGAGAAGGAGTCCTTGCAAGTAGAGTTGCAGAATCTGCATGATCTAATGGAGACATCTCACAATGGCGAAAGGAAAAAGAGCACAGATAAGCCAAGTTCCTCTTATAAGGGTTTGGAGGTCAGAGAAGAAGGCATGCGTTTACAAGATCAAAGAGAAATGAGCAAGAAGAATAATGGTTATTCCGAGGATAATACAGAATACCAACTTCTGAGAATGGAAATGGACGAGCTTGAAAAATGGTACGGTGGCGATCCAAGTGGCCTCTTAGATCAACCTTGTAGTTCACAATGGTTGGATTTTTGGACTTGA	651	0.4163	MMEVDEEYIQASEESFISCSEPSQNSRKKNKLVNKRRFSDEQIRSLECIFKSESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDEYDNLVSGFESLKKEKESLQVELQNLHDLMETSHNGERKKSTDKPSSSYKGLEVREEGMRLQDQREMSKKNNGYSEDNTEYQLLRMEMDELEKWYGGDPSGLLDQPCSSQWLDFWT	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0993	216	MobiDBLite	consensus disorder prediction	131	173	-	-
	Lele28g0993	216	SUPERFAMILY	Homeodomain-like	20	88	IPR009057	-
	Lele28g0993	216	Pfam	Homeodomain	35	87	IPR001356	GO:0003677
	Lele28g0993	216	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lele28g0993	216	SMART	HOX_1	31	93	IPR001356	GO:0003677
	Lele28g0993	216	MobiDBLite	consensus disorder prediction	13	27	-	-
	Lele28g0993	216	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	25	173	IPR045224	GO:0003700
	Lele28g0993	216	MobiDBLite	consensus disorder prediction	130	178	-	-
	Lele28g0993	216	Coils	Coil	95	129	-	-
	Lele28g0993	216	ProSitePatterns	'Homeobox' domain signature.	64	87	IPR017970	GO:0000981\|GO:0006355
	Lele28g0993	216	CDD	homeodomain	35	90	IPR001356	GO:0003677
	Lele28g0993	216	FunFam	Homeobox-leucine zipper protein ATHB-7	13	89	-	-
	Lele28g0993	216	PRINTS	Lambda-repressor HTH signature	69	85	IPR000047	GO:0003677
	Lele28g0993	216	PRINTS	Lambda-repressor HTH signature	60	69	IPR000047	GO:0003677
	Lele28g0993	216	ProSiteProfiles	'Homeobox' domain profile.	29	89	IPR001356	GO:0003677
	Lele28g0993	216	Pfam	Homeobox associated leucine zipper	90	130	IPR003106	GO:0006355\|GO:0043565
	Lele28g0993	216	Gene3D	-	13	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0993	Lele-ChrLele28	6460426	6461189	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0993	7	216	Homeobox Transcription Factor Family	AT2G46680	38.672	2.20e-39	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele28g0993		Homeodomain	8.6e-16	CL0123