Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0978 ATGGCGGGTTCTGAGACCAAGTTCGTGCAGGAGTTGATTTTGTATGCAGCGAGCGCCGCGTTGAGTTGCTTGGTCTTGTTTGTGGGTCTCCGGCAACTCGACCCGAACCGTGAGGCTTCAAAGAAGGCACTTGAGCACAAGAAGGAGATAGCCAAGCGTCTGGGTCGTCCTCTTATTCAGACAAACCCTTACGAGGATGTTATTGCTTGTGATGTTATAAATCCTGATGACATTGATGTGGAGTTTGATTCCATTGGAGGGCTGGAGAAGATCAAGCAAGCTTTATTTGAGCTTGTTATACTGCCTCTTAAACGACCAGAGCTGTTTTCTTATGGCAAGCTTCTTGGACCTCAGAAAGGGGTACTATTGTATGGTCCCCCTGGAACTGGGAAAACTATGCTTGCCAAAGCCATTGCGAAGGAGTCTGGAGCTGTTTTTATTAATCTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCAGCTGTATTTAGCCTGGCATATAAGCTCCAACCTGCCATTATATTCATTGATGAAGTTGACAGTTTTCTTGGTCAGCGGCGTTCATCGGATCATGAGGCATTATTAAACATGAAAACCGAGTTTATGTCCTTATGGGATGGATTTACCACAGACCAAAATGCCCAAGTGATGGTCCTTGCAGCAACCAATCGTCCTTCGGAACTTGATGAAGCCATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAGTTCCAGATCAAAAGGAGAGGGTTGAGATATTAAAGGTTATCTTGAAGGGTGAGAGAATTGAAGGCAACATTGACTTTGATTACATAGCTGGCTTGTGTGAGGGTTATACGGGTTCTGATTTATTTGAACTCTGCAAGAAAGCTGCTTATTTCCCTATTAGGAACCTACTTGATGAAGAGAAAAAAGGGAAACAGTCTCCTCAGTTGATATTTTGCTATCTAATGCTGAAATTGATCAGAGTACATTTCATACCAGTGCTTAGTCTGCACCAAGGCCATTGTCAGTCAGATTTGGAGAAGGTCCTTGCCACTTCAAGGAAAACGAAAGTTGCTGCCGGTGAATACAGCGGATTAACCCTGCATACGCCAAGATGGTCGGGGCACAGTGAGTCAGGTGATTATCAGTTTCAAGATGCAATCAGTGAATTATCTAAGCTTGTGGTTTCTCAAATTATTAACCTCCAATCTGACGCTCAGGATCCTTAA 1236 0.4409 MAGSETKFVQELILYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDDIDVEFDSIGGLEKIKQALFELVILPLKRPELFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINLRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSSDHEALLNMKTEFMSLWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGVPDQKERVEILKVILKGERIEGNIDFDYIAGLCEGYTGSDLFELCKKAAYFPIRNLLDEEKKGKQSPQLIFCYLMLKLIRVHFIPVLSLHQGHCQSDLEKVLATSRKTKVAAGEYSGLTLHTPRWSGHSESGDYQFQDAISELSKLVVSQIINLQSDAQDP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0978 411 SMART AAA_5 117 253 IPR003593 -
Lele28g0978 411 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Lele28g0978 411 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Lele28g0978 411 Gene3D - 252 313 - -
Lele28g0978 411 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 42 354 - -
Lele28g0978 411 Pfam AAA+ lid domain 273 308 IPR041569 -
Lele28g0978 411 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Lele28g0978 411 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lele28g0978 411 Gene3D - 79 251 IPR027417 -
Lele28g0978 411 CDD AAA 86 250 - -
Lele28g0978 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0978 Lele-ChrLele28 6396209 6399983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0978 38 317 Calmodulin-binding Proteins AT3G56690 32.746 5.12e-39 147