Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0969 ATGAGTGATGAGATGGCGGACCATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATATTGTCCTTAGTATATCTGATATCACCAAAGCAGCCAATGAGATTCTGATTCAGAAGGATAATTTCAGAAAATTCTCAACTTACCTGGAGAAAGTCTCATTAATATTAAAAGGACTATCAAAAGAAGACATACCCCAAGCAGAAAGCTTGAAAAATTCCCTGGGTGTTCTGAACCAACAAGTTAAAGTTGCTAAACAGCTGGTTTATGAGTGCAACTGCAAGAGTAAAATTTATCTTTTGATCAGTTGCAGAAAGATTGCTAAGAATTTGGAGTGTTGTACGAAAAACATAAGCCGAGCCGTGAGCCTTATCCCTCTCACCTCTTTGGATGTCTCTTCGGGTCTAAGTAAACAAATAAGTGAGCTATGCCACAACATGTTAGACGATGAGTATAAAGCATCTGCAGCAGAAGAGGAAATTCTGAAAAAACTTGAGTGGGCAATAGAAGAAGGAAATGCCGAGCGCTCTTATGCGAATCAGTTGCTAGCTCGTGTTGTGGATGTCATTGGGATCTCAAACGAGCATGCTGTTATAAAGAGAGAATTTAAAGAGTTGAAAAGTAACATGCAAATTGCTGGGTCAAGAAGAGATATAGCAGAAGCTCTACATATGGAGCAGATTGTTGGAGTGCTTGAAAAAGCTGATTCTGTTACTTCATCACAAGAGAAGGAGAAGAAGTATTTTGAAAAGCGAAATTCGCTGGGACGACAACTGATGGAGCCGTTACATTCGTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCGAGACATTTGAAAGAAAGGCAATAGAGAAGTGGCTTGCAGAAGGGAACAACAAGTGTCCCTTAACTACGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTCCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATTATCACCCTTTCTACTCTTAAGTCCAAACTTGAGAGTGATGATGATGAAGAGGAAATGCTTCAATCCTTAGAAAAATTACAGGGCCTCTGCTTGGAGAGACAGATGCACCGAGAATGGCTGAAAATGGAGAATTATATCACAACTCTGATCAAGCTCCTCGGTGCTAAAAATAGAGAAATAAGGAAGCGTGTTCTCTCCATCCTGTCTTTGCTTGCAAAGGATAATGAAGAGAACAAGGAAGATATTGCTAAAGCTGATAATGCACTAGAATCAATTGTTCGCTGCCTCGCACGGCAAATAGAGGAAAGTAAGTTGGCAGTGGAGTTGCTGTTAGAATTGTCTAGAAGTACTGCGGTGCGTGATCTCATAGGAGATGTTCAAGGAAGCATACTCCTCTTAGTAACAATGTTAAGCAGTGATGATGTTGAAGCAGCCCATAATGCACGTGAGCTTCTCGGTAACCTCTCTTTCCTTAACCAGAAAGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCTTCAGGAACGGAAAATGTGAAGATAATCATGGCCAAAACTTTATCAGAGATTGAATTGACTGACCAAAATAAAGTATCAATAGTCAAAGATGGGGCACTTCAGCCACTTCTTCAGTTGCTCTCTAATTCTGACGTGCAAATCAAGGAAGTAGCTGTGAAAGCTCTTCTGCAGCTTTCAAGCTTGCCAGTAAATGGCCTACTGATGATTAGGGAGGGTGTTGCTCAATCACTATTCCAGCTGCTATTTCGTCACAGTTTACAATCGACTGCTCTGCGAGAACAGGCGGCCGCCACTATAGTGCATCTTGCCATGTCAACCACTCACCAACGAGCCGATGAAGTTCAGGTTTCATTGCTAGATTCTGAAGATGATGTATTTAAATTCTTCTCCCTTGTTTCCTTCACAGGACCTGATATACAAAGCAAGATTCTGAAAACTTTCCTGGCGATGTGCCAATCTCCCTCTGGTCTCACCATCAGAGAAAGTTTAAGACAGCTCTCAGCTGTTCAAGTGTTAGTTCGCTTGTTGGAGCTCGATAACCAAACTGTTCGCGCAAATGCCATGAAGCTGTTCTATTACCTGACAGAAGGTGGATATGATTGCAGAAACTTTACATCACATATAACTGAAAGATGTATCAATGTCTTGATCACCATCATCAAGACTACTGATGATGCAGAAGAGGTTGTTTCTGCTATGGGTATCATCTCAAGACTTCCAAGGGAACCGCATATAACCAAGTGGCTTTTAGATTCTGGCGCGGTTAAAATTATCTTGGATTGTCTTTTGGATCGACATAAACACACCTCGCACAAACGGCAAGTCATCGAGAAATCCGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAACATAGAGTGTCAGAAGACAGTAGCTCAAGAAGGCATCATCCCTATCCTGGTTCAATTGCTGGATTCTGGGACATCCCTGTCAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCACGTCTCTTAAGCAAGCCGATAAAAAACCCAGGCATATTCAAATTCTGCTTCGTACCTCATGAAATCGGTTGTCCGGCGCACCTGGGCACGTGTACAATTGAGTCTTCATTCTGTATCATAGAAGCTGATGCTTTGAAGCCCCTTGTGAGGTTGCTTGAAGAGCAAGATATTGGAACATGTGAAACTTCCTTAGATGCACTTTTGACTTTGATTCAGGGTGAAACACCACATGGTGGATGTAAGGTGCTTGCAGATGCAAATGCTATTACTCCACTGATAAAGTTATTGAGTCTTCAATCTGCCAGATTGCAGGAAAAAATTCTGGTAGCTTTAGCGAAAATATTTCAAGTAGAGGAAATAAAAAATAAGTATAAAGGTTCAGCCACAATGCCATTGGTAGACATAACGCAGAGGAAAGATAGTCGATTGAGAAGTCTTGCTGCCAGAGTCCTTGCACAATTGGGTGTACTTGAGGAACAATCTTCTTATTTTTAA 3042 0.4119 MSDEMADHSIDHASLIPASELLFHIVLSISDITKAANEILIQKDNFRKFSTYLEKVSLILKGLSKEDIPQAESLKNSLGVLNQQVKVAKQLVYECNCKSKIYLLISCRKIAKNLECCTKNISRAVSLIPLTSLDVSSGLSKQISELCHNMLDDEYKASAAEEEILKKLEWAIEEGNAERSYANQLLARVVDVIGISNEHAVIKREFKELKSNMQIAGSRRDIAEALHMEQIVGVLEKADSVTSSQEKEKKYFEKRNSLGRQLMEPLHSFYCPISLDIMEDPVETSSGETFERKAIEKWLAEGNNKCPLTTLPLDTSKLRPNKTLRQSIQEWKDRNTIITLSTLKSKLESDDDEEEMLQSLEKLQGLCLERQMHREWLKMENYITTLIKLLGAKNREIRKRVLSILSLLAKDNEENKEDIAKADNALESIVRCLARQIEESKLAVELLLELSRSTAVRDLIGDVQGSILLLVTMLSSDDVEAAHNARELLGNLSFLNQKVIEMAKANYLKPLLQNLSSGTENVKIIMAKTLSEIELTDQNKVSIVKDGALQPLLQLLSNSDVQIKEVAVKALLQLSSLPVNGLLMIREGVAQSLFQLLFRHSLQSTALREQAAATIVHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPDIQSKILKTFLAMCQSPSGLTIRESLRQLSAVQVLVRLLELDNQTVRANAMKLFYYLTEGGYDCRNFTSHITERCINVLITIIKTTDDAEEVVSAMGIISRLPREPHITKWLLDSGAVKIILDCLLDRHKHTSHKRQVIEKSVQALCRFTVSTNIECQKTVAQEGIIPILVQLLDSGTSLSKQNAAISIKQFSESSRLLSKPIKNPGIFKFCFVPHEIGCPAHLGTCTIESSFCIIEADALKPLVRLLEEQDIGTCETSLDALLTLIQGETPHGGCKVLADANAITPLIKLLSLQSARLQEKILVALAKIFQVEEIKNKYKGSATMPLVDITQRKDSRLRSLAARVLAQLGVLEEQSSYF 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0969 1013 SUPERFAMILY ARM repeat 883 1004 IPR016024 -
Lele28g0969 1013 Gene3D - 340 438 IPR011989 -
Lele28g0969 1013 Gene3D - 439 864 IPR011989 -
Lele28g0969 1013 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Lele28g0969 1013 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Lele28g0969 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 1013 - -
Lele28g0969 1013 Pfam Armadillo/beta-catenin-like repeat 537 575 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 370 410 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 881 921 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 924 965 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 757 804 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 671 712 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 453 494 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 536 576 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 412 452 IPR000225 GO:0005515
Lele28g0969 1013 SMART arm_5 807 847 IPR000225 GO:0005515
Lele28g0969 1013 Pfam U-box domain 269 335 IPR003613 GO:0004842|GO:0016567
Lele28g0969 1013 CDD RING-Ubox_PUB 269 309 IPR045210 -
Lele28g0969 1013 SUPERFAMILY ARM repeat 339 501 IPR016024 -
Lele28g0969 1013 SUPERFAMILY RING/U-box 254 337 - -
Lele28g0969 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 339 IPR013083 -
Lele28g0969 1013 Gene3D - 873 1011 IPR011989 -
Lele28g0969 1013 SUPERFAMILY ARM repeat 508 862 IPR016024 -
Lele28g0969 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0969 Lele-ChrLele28 6342280 6345673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0969 268 1013 U-box Gene Family AT1G76390 28.589 2.64e-66 237