LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0951	ATGTTTCGATATGGGCTCTTAGATGAGAGTCAAAACAAGCTCAATTACGTCTTGACTTTGACTGTGGAGAACTTCTTCGAGCGTCGTCTTCACACACTCGTCTTCAACTTTGGGGTGGCCAAGTCTATTCTTCATGCTAGGGTTCTCATCAGGCAGAGACATATCAGGAAATTAATTTCTATGTCTCTTTGGCTTGCTAGGGTTGGGAGGCAGGTGGTGAACATCCCATCATTCATGGTTCGAGTTGATTCCCAAAAGCATATTGACTTTTCACTTACAAGTTCTTTTGGGGGCGGTCGTCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTACCAAGAAGGCTGCTGGCGGAGATGGAGATGAGGAGGATGGGGAGTAA	384	0.4661	MFRYGLLDESQNKLNYVLTLTVENFFERRLHTLVFNFGVAKSILHARVLIRQRHIRKLISMSLWLARVGRQVVNIPSFMVRVDSQKHIDFSLTSSFGGGRPGRVKRRNQRAATKKAAGGDGDEEDGE	127

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0951	127	MobiDBLite	consensus disorder prediction	95	127	-	-
	Lele28g0951	127	PANTHER	30S 40S RIBOSOMAL PROTEIN	1	114	IPR022801	GO:0003735\|GO:0015935\|GO:0019843
	Lele28g0951	127	TIGRFAM	uS4_arch: ribosomal protein uS4	2	96	IPR005710	GO:0003735\|GO:0006412\|GO:0015935
	Lele28g0951	127	CDD	S4	28	83	-	-
	Lele28g0951	127	Gene3D	-	27	96	IPR036986	GO:0003723
	Lele28g0951	127	SUPERFAMILY	Alpha-L RNA-binding motif	12	88	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0951	Lele-ChrLele28	6217805	6218676	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0951	1	117	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	74.359	1.36e-56	172

Showing 1 to 1 of 1 entries