LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0940	ATGAGGGAGGGGCTGCTATCTCTTCTGAATTTTCTTGGAAAGCAAATACAAATGGATTCTGTAAAGATGGCGGCTTCCAGAGAAAACTGTCATGATAATTTTTTGTTCTGCCCAAATGCTATGCACATGGGAGCTAAAGAATTCAATCATTTCCAGACGCATTGGATAAGTGGTGAGCCTGTTATTGTTAGGAATGCATTTGAAAAGGCTAGGGGCCTTAGCTGGGATCCTATGGTTGAAATTAATATCTTCCAGTTCTTCAAGGGCTACCTTGAAGGTCGTAGGTATAGAAATGGGTGGCCTGAGATGTTGAAGCTGAAGGATTGGCCTCCATCAAATGCTTTCGAAGAGTGTTTGCCTAGACATGGTACTGAGTTTATAGCCATGCTTCCATTTAGTGACTACACTCATCCCAAATCTGGTATTCTGAATCTTACTACAAAGCTACCTGTTGTTTTAAAGCCATATTTGGGCCCCAAAACATACATTGCGTATGGATCTTTAGAAGAGCTCGGTAGAGGTGATTCTGTAACGAAACTGCATTGTGACATCTCCGATGCGGTCAATATATTGACACATACAGCTGAAGTAAAGAGACCACCACGGCAAAGAAAAGCCATAAAAAAATTACAGAAAAAGCATGTAACTGAAGATATGTGTGCACTCGATGGCGGGAAGAATGAAGGATTGGGTTCTTGTAGGAAAAAACCAAAACGGGGCTGCCTGGATATAAGCATGGGTTCTAAAAGCCCTAGAAAAGAAGACATTATCGTGGGAGACTCTACTGTACTTAAAAGTCAGCTATCAGAGGAAGAGAGTATGAATGAACCGCGGAATGGGTCTGAAGATTTGGGACCCTCAAGAGCACATGTAGCAGCTTGCACTCTAGAATGGGCAGCTGCTCCCAAAAGTGAAAAAAAAGATGGGGAATGGACGTATGGTGAAGTTAAGAATGCAGTCCAAAAAAACTCGTTTTCAAATGATGGCCATCATGAAGGAATTTCATCCCCTGAACATATTCTGTCTGGAACATTCACAAAAGACAGTTATGAAAAAGGAAAAACTTCTGGTGCGCGTGTGCTGAGGAGTCTCCTAATGGAATCATTCCCAACGTTGAGCATCATTGCGACAATTCCTGTGCTGGGGACTAACACGGGTCGTGACTCCATGCTTCACAAGTCTTATGAACATGGTTCTATAAAGGATTTTGAAAGACATTTGAATAGTCAAGAATCAAAAGCTTCCCTTGAAAATGACGATTTGTCCGAGAATCAACACGGGAGTGCCGTATGGGACATATTTCGTAGGCAAGATGTGCCAAAGCTGACAGAGTACCTGAAGAAACACTACAGAGAATTCCGCCACATAAATAGTCTTCCTGTGAATTCTATAACACATCCAATTCATGACCAGATTCTTTACCTAAACGAAAGACATAAAAAGCAGCTAAAGGAAGAATTTGGCATTGAACCATGGACATTTGAGCAACACCTTGGGGAGGCTGTTTTCATACCTGCAGGGTGCCCACATCAAGTGAGGAATAGACAGTGGCGCTCGACTTTGTTTCACCTGAAAATATTCAAAGAGTGCGTTCGATTGACGGAGGAGTTTCGGCTGCTTCCAAAGAACCATAGATCTAAGGAAGATAAACTAGAGATCTATGAATGCTTTGTTCTATATGCAATAATGTCAAAGATAAAGAAGATGGCACTATATGCTGTCAAAGCTGCTATAACTGAAGCCATGAAATTAATGCAGAGGATATGA	1767	0.4171	MREGLLSLLNFLGKQIQMDSVKMAASRENCHDNFLFCPNAMHMGAKEFNHFQTHWISGEPVIVRNAFEKARGLSWDPMVEINIFQFFKGYLEGRRYRNGWPEMLKLKDWPPSNAFEECLPRHGTEFIAMLPFSDYTHPKSGILNLTTKLPVVLKPYLGPKTYIAYGSLEELGRGDSVTKLHCDISDAVNILTHTAEVKRPPRQRKAIKKLQKKHVTEDMCALDGGKNEGLGSCRKKPKRGCLDISMGSKSPRKEDIIVGDSTVLKSQLSEEESMNEPRNGSEDLGPSRAHVAACTLEWAAAPKSEKKDGEWTYGEVKNAVQKNSFSNDGHHEGISSPEHILSGTFTKDSYEKGKTSGARVLRSLLMESFPTLSIIATIPVLGTNTGRDSMLHKSYEHGSIKDFERHLNSQESKASLENDDLSENQHGSAVWDIFRRQDVPKLTEYLKKHYREFRHINSLPVNSITHPIHDQILYLNERHKKQLKEEFGIEPWTFEQHLGEAVFIPAGCPHQVRNRQWRSTLFHLKIFKECVRLTEEFRLLPKNHRSKEDKLEIYECFVLYAIMSKIKKMALYAVKAAITEAMKLMQRI	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0940	588	Gene3D	Cupin	385	547	-	-
	Lele28g0940	588	Gene3D	Cupin	30	242	-	-
	Lele28g0940	588	SUPERFAMILY	Clavaminate synthase-like	37	552	-	-
	Lele28g0940	588	MobiDBLite	consensus disorder prediction	267	286	-	-
	Lele28g0940	588	Pfam	JmjC domain, hydroxylase	423	517	IPR003347	-
	Lele28g0940	588	SMART	cupin_9	119	538	IPR003347	-
	Lele28g0940	588	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	18	585	IPR045109	GO:0032454\|GO:0033169
	Lele28g0940	588	ProSiteProfiles	JmjC domain profile.	138	554	IPR003347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0940	Lele-ChrLele28	6137480	6141545	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Lele28g0940		JmjC	1.1e-13	CL0029