Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0933 ATGAACTACGGCAGGCTCCCAGCCTCCCAACCAGGTGGCTCCTTCCGCCGCTCCGATGATCCCATTCCTCCCCCTACCTCCTCCCGCAGCAAGAAGAAGCTCATCTTACTGTCGGCGGTCGCTGTTGTCTTGATTGTGGCTTCAGCTGTCTCCGCCGTGCTCCTTGTCGGCATCCAACGTCGGCCTTCCGGTCCTGAGGATTCGGGCACCGGCGGGAAGCCCACTCAGGCTATTTCACGCGCCTGCGGCAAAACTCAGTTCCCTTCCCTCTGCGTGAAGTCGCTCCTCGATTTCCCGGGTTCCGGGGCCGCTTCTGAGCAGGATCTCGTCCACATTTCGCTCAACATGACATTGCAGCGCCTGAGCAAAGCCTTCTATTCCTCCACCTCCATCTCCAACTTCCAGATGGATCAGCGTCAACGATCGGCTTATGAGGACTGCCTCGAGCTGCTCGAGGATTCCGTCGACGCGCTCATGCGCTCCCTCACCTCCGTCGTCCCAGGAGGCGGCGGCGGGTCCACCGACGATGTGCTGACTTGGCTCAGCGCCTCACTCACGAATCAAGACACGTGCAGCGAGGGGTTCGTGGACACGAGCGGGACAGTGAAGGATCAGATGGCCAGTAACTTGAAGGACTTATCGGAGCTCATTAGCAACTGTCTGGCGATATACGCCGGGAGCGATGCGGGCAATGATTTCTCAGGGGTTCCGATAGAGAACAAGAGAAGATTAATGGGAGACATTGACAATGGCGACATCCCATCGGGCGAATTCCCGACCTGGTTAAGCAAAAGAGACAGGAGATTGTTGAGCACGCCGGCACCGGCGATTCAAGCAGATATCGTCGTGTCGAAGGACGGGAGTGGAACCGTTAAGACCATAGCGGAGGCGATAAAGAAAGTGCCGGAGCACAGCAGCCGCCGGATCATCGTGTACGTGAAGGCAGGAAGATACGAAGAGGAAAATTTGAAGGTTGGGAGGAAGAAAACGAATGTGATGTTCGTAGGTGATGGGAAGGGCAAGACGGTCATCACAGGAGGCAAGAATTTTGCCCAGGGCACCACCACCTTCCACACTGCCTCCTTCGCTGCTTCTGGGGCTGGTTTTATTGCCAAGGATATGACATTCGAGAACTATGCGGGGCCCGGGAAGCACCAAGCGGTGGCCCTCCGTGTTGGAGCCGACCATGCGGTGGTGTACCGATGCAGCATCATCGGATACCAAGACACATGTTATGTCCACTCCAACCGTCAGTTCTTCAGGGAATGTGACATTTATGGCACTGTTGATTTCATCTTTGGTAACGCGGCCGTGGTTTTCCAAAACTGCAACCTCGTATCTCGAAAGCCCATGGCCCAACAAAAGAATACCATCACAGCCCAAAACCGAAAGGACCCGAATCAGAACACGGGTATTTCCATCCACAATTGTCGGATCCAAGCCGCTTCTGATCTGGAGGCCTCCAAGGGAAGCATCCCAACCTATCTGGGCCGTCCGTGGAAGATATACTCTAGAACCGTTTACATGCTATCCTTCATGGAGGATCACATCCATCCACGTGGATGGTTGGAGTGGAATGCCACATCTCCAGTAGACAAATTGTATTACGGAGAGTATATGAACAGTGGGCCAGGTGCAGCTGTTGGAGGCCGGGTCAAATGGCCGGGCTATCGTGTTATAACGTCGACAGTGGAGGCGAATAGATTCACAGTGGCTCAATTCATAGCGGGGTCATCATGGTTGCCGTCAACAGGAGTGGCATTCGTCGGAGGACTATCTAACTAA 1785 0.5479 MNYGRLPASQPGGSFRRSDDPIPPPTSSRSKKKLILLSAVAVVLIVASAVSAVLLVGIQRRPSGPEDSGTGGKPTQAISRACGKTQFPSLCVKSLLDFPGSGAASEQDLVHISLNMTLQRLSKAFYSSTSISNFQMDQRQRSAYEDCLELLEDSVDALMRSLTSVVPGGGGGSTDDVLTWLSASLTNQDTCSEGFVDTSGTVKDQMASNLKDLSELISNCLAIYAGSDAGNDFSGVPIENKRRLMGDIDNGDIPSGEFPTWLSKRDRRLLSTPAPAIQADIVVSKDGSGTVKTIAEAIKKVPEHSSRRIIVYVKAGRYEEENLKVGRKKTNVMFVGDGKGKTVITGGKNFAQGTTTFHTASFAASGAGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYRCSIIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCNLVSRKPMAQQKNTITAQNRKDPNQNTGISIHNCRIQAASDLEASKGSIPTYLGRPWKIYSRTVYMLSFMEDHIHPRGWLEWNATSPVDKLYYGEYMNSGPGAAVGGRVKWPGYRVITSTVEANRFTVAQFIAGSSWLPSTGVAFVGGLSN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0933 594 Pfam Pectinesterase 280 577 IPR000070 GO:0030599|GO:0042545
Lele28g0933 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 224 IPR035513 -
Lele28g0933 594 FunFam Pectinesterase 74 227 - -
Lele28g0933 594 SUPERFAMILY Pectin lyase-like 275 591 IPR011050 -
Lele28g0933 594 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Lele28g0933 594 CDD PMEI-like_3 81 223 - -
Lele28g0933 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 224 IPR006501 GO:0004857
Lele28g0933 594 MobiDBLite consensus disorder prediction 1 29 - -
Lele28g0933 594 FunFam Pectinesterase 274 592 - -
Lele28g0933 594 Pfam Plant invertase/pectin methylesterase inhibitor 77 223 IPR006501 GO:0004857
Lele28g0933 594 SMART PMEI_2 73 223 IPR006501 GO:0004857
Lele28g0933 594 Gene3D - 274 592 IPR012334 -
Lele28g0933 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 226 IPR035513 -
Lele28g0933 594 PANTHER PECTINESTERASE 46 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0933 Lele-ChrLele28 6090767 6093983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0933 1 594 Carbohydrate Esterase AT5G53370 65.050 0.0 795