Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0910 ATGGACGACGGTTTCTCTGATATTTTTGAAGACAAAGACTTGGACTTGGGTGGCGAAGATCTGCTTGCCATTTTGGACTCCCTCGAGGACTTCACCAATTTCCCTCCTGTCGAAGAATCCATTACCGTTACCTCGAAAGAGAATAACGACGAAACCACAAGCGCTCTTCAATCTGATTCTTCACCAACTCATCAGCTTGAAACTACAACCAACAGAACCAAGAGACAGAAGCTTTCGGAGTCATCTGAAGAACCTAAGATATCTCATATCACCGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAACGAGGTGATCAAGCATCAATAATAGGAGGAGTGGCGGAGTACATCAACGAGTTGCAGCAACTTCTGCAATCCCTGGAGGCGAAGAAACAGAGAAAGGTGTATAACGAAGTTCTGAGCCCTAGGCTGGTATCAAGCCCAAGGGTTTCTCCTAGAGTGACGATGCCGCCAGTGAGCCCTAGGCTAAACCTACCGATTAGCCCAGGCACGCCACAGCCAGGTAGCCCCTACAAGACCCAACCCAGAATGTCCACCTCTCTGGAACCATCTCCCACATCTTCTGCTTCTTCCTCCATCAACGACAATATAAACGAGCTCATCGCAAACTCCAAGTCCCCCATCGCCGACGTCGAGGTTAAGTTCTCCGGGCCCCACGTGCTCTTAAAAACTCTGTCTCCTCCAATCCCTGGACAAGCTTTAAAAATCATCTCCGCTCTTGAAGATCTGGCCCTCGAAATCCTTCAGGTCACCATCACCGCTGCTGAAGAAAGCGTACTTAACTCATTCACCATCAAGATTGGAGTTGAATGTCAGCTCAGTGCCGAGGATCTGGCTCAACAAGTCCAGCAAACTTTTTCGCCACACGGGCTTCTCTCGTGA 948 0.4926 MDDGFSDIFEDKDLDLGGEDLLAILDSLEDFTNFPPVEESITVTSKENNDETTSALQSDSSPTHQLETTTNRTKRQKLSESSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVAEYINELQQLLQSLEAKKQRKVYNEVLSPRLVSSPRVSPRVTMPPVSPRLNLPISPGTPQPGSPYKTQPRMSTSLEPSPTSSASSSINDNINELIANSKSPIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILQVTITAAEESVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGLLS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0910 315 MobiDBLite consensus disorder prediction 177 191 - -
Lele28g0910 315 MobiDBLite consensus disorder prediction 192 215 - -
Lele28g0910 315 SMART finulus 90 141 IPR011598 GO:0046983
Lele28g0910 315 PANTHER TRANSCRIPTION FACTOR FAMA 7 308 IPR044283 GO:0003700|GO:0010052
Lele28g0910 315 MobiDBLite consensus disorder prediction 161 215 - -
Lele28g0910 315 MobiDBLite consensus disorder prediction 70 87 - -
Lele28g0910 315 CDD bHLH_AtFAMA_like 87 158 - -
Lele28g0910 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 157 IPR036638 GO:0046983
Lele28g0910 315 MobiDBLite consensus disorder prediction 43 87 - -
Lele28g0910 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Lele28g0910 315 FunFam Transcription factor SPEECHLESS 75 150 - -
Lele28g0910 315 Coils Coil 128 152 - -
Lele28g0910 315 Pfam Helix-loop-helix DNA-binding domain 86 136 IPR011598 GO:0046983
Lele28g0910 315 MobiDBLite consensus disorder prediction 43 69 - -
Lele28g0910 315 Gene3D - 70 150 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0910 Lele-ChrLele28 5882180 5883625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0910 13 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.456 8.68e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0910 HLH 2.3e-09 No_clan