Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0906 ATGCTCCATCCCTGTCTGATATTGCGAGCATTCCCATTTCGGCTGTTTGATCCTATAAAACAGCGATTTCGGGCCACACAGAGTGTTCCAGGACCCCAGAATCTCCATCTTTTCCCCTTCTATTCTCTTCCATTCTTCGAGGTGCTAAACAGTGTTCCCTTTCGAAACTTCAAGGAAAGCCGGGCCTATTTGTTTCGCCCAGAATACGCTCTGTTTGGGATAGAAATCATGGAACAGAGTATCCTATGCAAATACACTGTCCATGAAAGGGTTACCAAGAAGTACACCAAACCGGTGGCGTCCAATAGGGCTTCCGATGTTCACAGCCCCATAGAGCCCAGGGTGGTTCGGATATCCGTCACCGATCCAGACGCCACTGACTCCTCCAGCGATGAGGAAGGAGAGTTCTGCTTTGGTCGCCAGAGAGTGAAGCGTTATGTGAACCAGGTTAATATCGAGCCAAGCTGCAAGAGCGCGGTGTCTTCAAATCCGCGAAAGAGGCCCGCAGGAGAAACTCAAGCCAGCCGGCGGCCGGTGAAGGTTTCCTCTACAAATAACGGAAGGAAGTTCCGAGGAGTACGACAGAGACCTTGGGGGAAGTGGGCGGCGGAGATTAGAGATCCCGCTCGCCGCGTACGCGTGTGGTTAGGCACCTTCGACACTGCAGAGGAAGCTGCGATGGTTTATGATAATGCAGCGATTAAGATACGGGGACCAGACGCGTTGACAAACTTCGTGACTCCACCGCCGAGGGAAAAGCCGGAAGAAGCAGAAGTGGCGGTGAAGCAAGAAATCAATGTGGTGGTGAAGTCGGAAGCGTCGGGCTCCGGCTACGATTCCGGCGACGAATCACATCGCCTTCCATCTCCCACTTCAGTGCTGCAATTCAGAGGCAGTTGCAGCGAAGAGACCGAACCGCAGAAGGCAAGCGAACCGGAGAAAGAGAGCGAGGCGGAGACGTCGGCAGCCGAAGTGGAAGATGTGTTCCTGGAGTGTGAAGGCGAAACGAGTCTGTCAGATGAGAAGGTGGACTATTTCGGGTTTGACATGCCAAAGGAGCAGGATTACTTCGGGTTCGAAATGGCAAATTGGGAGCAAGTGTTCGATTTCTCGACGCCGGAACCGGAGTACTCATTACTGTTCGAGGAACCTCCGTTTCTGGGGGAGACGAGGGCGATGTTAGCAGAGGAAGATGTCAGAGGGGACGATATGACCGTTGGGGGGTCAGAGTTGGAGTTGGAGAAATCGTTCTCGCCATCGACGTCGTGCCAAATGGACGATTACTTTCAAGACATATTGTCGGGTTCGGACCCTCTGGTGGTGCTGTGA 1329 0.5312 MLHPCLILRAFPFRLFDPIKQRFRATQSVPGPQNLHLFPFYSLPFFEVLNSVPFRNFKESRAYLFRPEYALFGIEIMEQSILCKYTVHERVTKKYTKPVASNRASDVHSPIEPRVVRISVTDPDATDSSSDEEGEFCFGRQRVKRYVNQVNIEPSCKSAVSSNPRKRPAGETQASRRPVKVSSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEEAEVAVKQEINVVVKSEASGSGYDSGDESHRLPSPTSVLQFRGSCSEETEPQKASEPEKESEAETSAAEVEDVFLECEGETSLSDEKVDYFGFDMPKEQDYFGFEMANWEQVFDFSTPEPEYSLLFEEPPFLGETRAMLAEEDVRGDDMTVGGSELELEKSFSPSTSCQMDDYFQDILSGSDPLVVL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0906 442 Pfam AP2 domain 189 238 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 ProSiteProfiles AP2/ERF domain profile. 189 246 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 MobiDBLite consensus disorder prediction 285 303 - -
Lele28g0906 442 MobiDBLite consensus disorder prediction 176 190 - -
Lele28g0906 442 MobiDBLite consensus disorder prediction 304 321 - -
Lele28g0906 442 CDD AP2 189 245 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 SMART rav1_2 189 252 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 MobiDBLite consensus disorder prediction 157 194 - -
Lele28g0906 442 PRINTS Ethylene responsive element binding protein signature 190 201 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 PRINTS Ethylene responsive element binding protein signature 212 228 IPR001471 GO:0003700|GO:0006355
Lele28g0906 442 FunFam Ethylene-responsive transcription factor 2 188 247 - -
Lele28g0906 442 SUPERFAMILY DNA-binding domain 189 246 IPR016177 GO:0003677
Lele28g0906 442 Gene3D AP2/ERF domain 188 247 IPR036955 GO:0003700|GO:0006355
Lele28g0906 442 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 113 338 - -
Lele28g0906 442 MobiDBLite consensus disorder prediction 272 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0906 Lele-ChrLele28 5850669 5853101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0906 83 303 AP2-EREBP Transcription Factor Family AT4G27950 51.327 4.92e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele28g0906 AP2 5.7e-14 CL0081