LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0900	ATGAAAGCTCTGCGTGAACCCTACAATCCACACCCAGTCACACTGGCTTCTTTAATTTATCTACACTTGAAACTGAAGCACATCAAATGTTATGGTGTGGTTGAGTTTGGTAGCGGTGGTCCATGGAAGAATGATGGCCATGAAAAGGCACTCAATTCCCACAGTGAACTCGCTTTTCTAGGCTCAACCAGAATCGGGTCTTTTCCCATTCTCAACCAGTTTTTGCTTCTGGATTTCACGTGTGTACACGAAGTTGGTTGCATGTCACTGTTTCCTGGTCAGGCCTCAATCAACTTGGCTGCTTCTTCCTTTTTCTCCAAATTTGTATCTTTGTCGCAGGTTGTCAGAATTCTTGTGAGAAATCATGGTCATTCCTATCTTCAAGTACGTTTCTCAATACATCCTTCTCAAAACATGGAAGAGAAGAGAGAGCTGACACTGAGCAGTGATGTTGCAGCTCACAGCTTCAGCTTCGACAAGAGAGTGGAGACCTCGAGTGGTGGAACTGTCATTCGCAAAACTAAATCATCGAGTGCTCAATTCTTGATCAACATTGATGGACTAATCAATGATGTTGCAGGAAGCTTTCGTCAGATGGATTCCAAAGTTAATGGTTCCTCCAGCAAGGAATTAACATATTCCCTTTCATTCTCAAGGGAACTCTCAGATGTCTTGAAGCTGCCAAGCTCCAACTGCAAAGATGGTGCATCTGATGTTTCTGCTGAAGACGAATCAGATTCATGCAAGTGCACAAGAATGCACATGGAACCCTCCTTGCCAATACATCTGAAGTTTGAAGATGTGAAATACAAGGTTCCAGAGAAAGGTGACAAGTCTTCTGGAGAAGGGAAGTACATTCTTCATGGGATCACCTGTTCGGTTCGCCCAGGAGAGATTCTTGCTCTAATGGGACCATCAGGAGGTGGTAAAACAACATTGCTCAATGTCTTGAGCGGAAGGACCAAGTTTAATTGTGGTTCTATCACTTACAATGACAAACCATATACCAAGTCATTAAAGCAGAGGATTGGATATGTAACGCAAGATGATGTTGTGTTCCCTCATCTTACAGTCAAGGAAACTCTCACATATGTAGCTTTGCTCCGTCTCTCGAAGGATCTGTCAGTAACACAGAAAAAAGAGAGGGTTATGAATGTTTTAAGTGAACTATGCCTCGAAAGATGCCAAGATACAGCAATTGGTGGCAAATTCATTAGAGGAGTTTCTGGGGGTGAGAGAAAAAGGGTCTGCATTGGCACAGAAATCCTGCTCAACCCGTCACTTCTGTTCTTAGATGAACCAACATCTGGTCTAGATTCAACCACAGCATCACGAATTGTTCAGATTCTTCTTAACATAGCCAAAGAGGGAAAGACAGTGGTGACAACAATACACCAGCCGTCAAGTAAGCTGTTCAGCATGTTTGACAGGTTGATTCTGTTGGGAAAAGGAAGTACCTTGTACTTTGGAAAAGCATCTGATGCAATGATGTATTTCTCCTCTATTGGTTGTTCTCCATTGATAGCCATGAACCCTGCAGAGTTCCTTATCGACCTTGCAAATGGCATCATGAATGACAAATCTGTCCCTTCAGAACTTGAAGATGAGTTCCAATATGGAATCAAAAAAATAAACATAAAAAACAACAACACACCCTCCTCAGTTGTTGTACACGAGTTTCTAGTCAAGGCCTATGAAATAAGGCTTGCAAAAAGAGAGAAAGCAATGCTTCTCGAACCCATGACAGTAAGGGGAGATCAGAGTGGGATGCAAAGCAGGCGATTGCTGAGGGACTTTGGAGCAACTTGGTCTCAACAATTTTGCATTCTCTTCATGAGGGGCATTAGGGAGAGGCGTCATGAGTATTTCAGCTGGTTGCGTGTAACCCAAGTAATATCAACCGCAATCATTGTTGGACTACTTTGGTGTAGCCTTGGTGGTTCTTCTCCCAAGAGTCTCCATGATCAGGCGGGGCTACTGTTCTTTCTTTCTGTGTTCTGGGGCTTCTATCCTCTGTTTACCGCTATCTTCATGTTCCCACAAGAAAGAGCAATGCTAGTGAAAGAGAGATCGATTGACATGTATAAACTCAGTGCTTACTTCTTAGCTAAGAACACCTGTGATGTTCCAATGGAGCTTCTAATGCCTCCAGTGTTCATGGTGATTGTGTATTTCATGGTTGGCTTGAAGCTACAATTTTCTGCATTTTTCCTCACCATACTCACAATTTTTCTCAGTGTTCTAGCAGCTCAGGGTCTGGGACAAACCATAAGTGCAGCATTTCTAGATGTGAAGAAAGCTACAACACTAGCCTCAATCGTTGTCATGACCTTCATGCTAACTGGTGGATTCTTTAGCCAACAAGTTCCAAGGTTTATGTCATGGTTGCGTTACGTCTCTTTCAACTACCACACTTACAGGTTGCTTTTGAAGATTCAATATGGCTGTGTGGGTTCAAGTTCTGCATCAGGTTGCAGTGAGTCTGCTTTCATGAAAAATAGTGAGACTAAATTCGGGGGGGAACTGGAAGTTGGTGCAATGATAACAATGATTATTATTTATCGGCTTATAGCGTATTTATTGCTAAGGAGAATGAATATAAGGACTAATTGA	2613	0.4256	MKALREPYNPHPVTLASLIYLHLKLKHIKCYGVVEFGSGGPWKNDGHEKALNSHSELAFLGSTRIGSFPILNQFLLLDFTCVHEVGCMSLFPGQASINLAASSFFSKFVSLSQVVRILVRNHGHSYLQVRFSIHPSQNMEEKRELTLSSDVAAHSFSFDKRVETSSGGTVIRKTKSSSAQFLINIDGLINDVAGSFRQMDSKVNGSSSKELTYSLSFSRELSDVLKLPSSNCKDGASDVSAEDESDSCKCTRMHMEPSLPIHLKFEDVKYKVPEKGDKSSGEGKYILHGITCSVRPGEILALMGPSGGGKTTLLNVLSGRTKFNCGSITYNDKPYTKSLKQRIGYVTQDDVVFPHLTVKETLTYVALLRLSKDLSVTQKKERVMNVLSELCLERCQDTAIGGKFIRGVSGGERKRVCIGTEILLNPSLLFLDEPTSGLDSTTASRIVQILLNIAKEGKTVVTTIHQPSSKLFSMFDRLILLGKGSTLYFGKASDAMMYFSSIGCSPLIAMNPAEFLIDLANGIMNDKSVPSELEDEFQYGIKKINIKNNNTPSSVVVHEFLVKAYEIRLAKREKAMLLEPMTVRGDQSGMQSRRLLRDFGATWSQQFCILFMRGIRERRHEYFSWLRVTQVISTAIIVGLLWCSLGGSSPKSLHDQAGLLFFLSVFWGFYPLFTAIFMFPQERAMLVKERSIDMYKLSAYFLAKNTCDVPMELLMPPVFMVIVYFMVGLKLQFSAFFLTILTIFLSVLAAQGLGQTISAAFLDVKKATTLASIVVMTFMLTGGFFSQQVPRFMSWLRYVSFNYHTYRLLLKIQYGCVGSSSASGCSESAFMKNSETKFGGELEVGAMITMIIIYRLIAYLLLRRMNIRTN	870

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0900	870	Gene3D	-	262	501	IPR027417	-
	Lele28g0900	870	Pfam	ABC-2 type transporter	605	814	IPR013525	GO:0016020\|GO:0140359
	Lele28g0900	870	FunFam	ABC transporter G family member 22	274	502	-	-
	Lele28g0900	870	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	263	508	IPR003439	GO:0005524
	Lele28g0900	870	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	265	496	IPR027417	-
	Lele28g0900	870	ProSitePatterns	ABC transporters family signature.	408	422	IPR017871	GO:0005524\|GO:0016887
	Lele28g0900	870	Pfam	ABC transporter	287	436	IPR003439	GO:0005524
	Lele28g0900	870	CDD	ABCG_EPDR	260	490	-	-
	Lele28g0900	870	Pfam	ABC-2 type transporter	465	529	IPR043926	GO:0140359
	Lele28g0900	870	SMART	AAA_5	296	485	IPR003593	-
	Lele28g0900	870	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	239	859	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0900	Lele-ChrLele28	5804988	5809990	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0900	263	560	Calmodulin-binding Proteins	AT2G36910	26.073	2.55e-16	82.0