Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0898 ATGTCAAGCAATGCAATAACTCTCTTTATCTTGTTTCTTAATATCTCCTTGTTTCCTTCTGTCTATACTCTGAACCAGGAAGGTCTCTCCCTACTTTCATGGCTTTCAACCTTCAATTCCTCTGATTCTGCTACTTCCTTCTCTTCATGGAATCCATCCGACAAAAGTCCTTGCAAATGGGATTATATAAGATGTTCCAAAAATGGGTTTGTTTCGGATATTATGATAACATCTATCAATCTTCGTGGCAGCTTCCCAACGCAACTCCTCTCTTTTGGTCACCTCACTACTCTTGTCATCTCAAACGGAAATCTTACTGGTGAGATTCCTAGCTCAGTAGGGAACTTGTCGTCTCTGGTTTCTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCTTCAGAAATAGGAAAGTTACCTAATCTGCAGTGGTTAAGGTTAAATTCAAATTCTTTACATGGTGAAATTCCAACAGAAATTGGGAACTGTTCCAAGCTTCGTCAGCTGGAATTGTATGACAACCAGTTCTCTGGCAAGATTCCTGGAGAGATAGGCCATTTGAAAGATCTAGAAATGTTTCGAGCAGGTGGGAATCAGGGAATCCATGGTGAAATTCCAATGCAGATTTCAAACTGCAAAGCTCTCACTTTACTGGGTCTTGCAGATACTGGGATTTCAGGGGAGATTCCATCAAGTATAGGAGAACTTAAGAATCTCAAGACCCTTTCTGTCTACACAGCAAACCTCACAGGTCATATCCCACCAGAGATTCATAACTGCTCAGCCTTGGAGAATTTGTTTCTATATGAAAATCAGCTTTCTGGTAACATTCCTTATGAATTGGGTTCCATGAAAAGGTTAAGGAGAGTAATGCTATGGCAGAACAATTTAACTGGCACTATTCCAGAAAGTCTGGGGAACTGTACAAATCTGGTGGTTGTAGATTTTTCTTTGAATTCCTTGGAAGGTGAGCTCCCTGTGACTCTTAGAAATTTGCTCTTATTGGAGGAGCTTCTTCTCTCTGATAATAACATTTCTGGAGAAATACCTTCCTTTATTGGCAATTTTTCCAGACTGAAGCAGCTTGAATTAGATAACAACAGATTCTCTGGCAAGATTCCACCTGTTATGGGACAGCTTAAAGAACTCACCTTGTTCTTCGCTTGGCAGAACCAACTCTATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAGGCACTTGATCTCTCACACAATTTCCTCACTGGGTCAATTCCAAGTTCTCTCTTTCATCTAGAGAACTTGACTCAACTATTGTTGATATCAAATCGACTTTCAGGTCAACTTCCACGAGATATTGGCAGCTGCACCAACTTGGTCAGACTTCGGCTGGGATCAAACAACCTTACTGGTCCAATTCCACCTGAAATAGGTCTTTTAAGCAGATTGAGCTTTCTTGAATTGTCAGATAATCTTCTCAGTGGAGAAATTCCCGACCAGATTGGCAAATGCAATCAGCTACAAATGCTTGACTTGCACAAGAATCAGCTGCAAGGAACAATTCCTTCCTCCCTTGAATTTCTACTTGTTCTTAATGTCTTGGATCTTTCTACAAACAGAATAACTGGAAGTATTCCCCAAAATTTGGGAAAGCTTACATCTTTAAATAAGCTAATAATCAGTGGCAACAGCATTACAGGTTTGATCCCTCAGTCACTGGGCCTTTGTGAGAATCTGCAGTTGCTGGATATTAGCAACAACAGAATCTCTGGTTCCATCCCAGATGAGATTGGCCAATTGCAAGGACTCGATATCCTCTTGAACTTGAGTTGGAACTCTCTAACAGGTCCCATTCCAGAAAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACGTCTCCCACAACAGGCTAACAGGCAGACTCAGAATACTGGGTAGTCTTGACAATTTAGTGTCTTTGAATGTCTCCTACAATAGTTTTTCCGGTTCACTTCCAGATACAAAGTTCTTTCATGATCTCCCTGCTTCTGCATTTGCTGGTAACCCTGAGCTCTGCATTAGCAAGTGTGACATGAATCGAAATCACCAAGGCATCAAGTCAGTAAGAAATGTTATTATTTACACTTTTCTTGGTGTTATCTTAACAGCTATGTTTGTGACTTTTGGAGTAATTTTTGCTCTGAGAATTCACGGGGCCACATCTGAGAGGGAATGTGATGAAGAAATTGAAATGGAATGGACTTTTACTCCATTTCAAAAACTTAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACGTTGTAGGAAAGGGTTGCTCAGGGATTGTTTATCGAGTAGAGACTCCAATGAAACAGATAATTGCAGTGAAGAAGCTCTGGCCAATAAAGGATGACGAGCCACCACCGGAGAGAGATTTGTTTTCTGCAGAGGTTCAGACCTTGGGATCAATAAGACATAAAAATATAGTCAGGCTTCTAGGATGCTGTAACAATGGAAGAACCAGATTACTCCTATTTGATTATATCAGCAATGGGAGTTTGTGTGGGTTGCTCCATGACAAGAGGTTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCAAGGTTTAGAATATCTGCATCATGATTGCATACCTCCAATTTTCCATAGGGATATTAAGGCCAACAACATCTTGGTAGGACCACAATTTGAAGCTTTCATTGCAGATTTTGGTCTTGCAAAACTGGTGAATTCCTCTGAGTGTTCAAAAGCCTCTGTCATAGTTGCAGGCTCTTATGGGTACATAGCCCCTGAATATGGATACAGCCTCAGGATCACAGAGAAGAGTGATGTGTATAGTTACGGGGTGGTTTTGCTGGAGGTTTTGACGGGGATGGAGCCAACTGATAATAGGATTCCAGATGGTGCCCACATTGTTACTTGGGTTAACAGGGAAATCAGAGAGAAGAAAAGGGAATTCACATCAATTCTTGACCAGCAACTAGCATTACAATGTGGTACTAGAACGCCAGAGATGCTTCAAGTTCTTGGGGTGGCTCTCTTATGTGTAAATCCATCCCCAGAAGAACGACCCACCATGAAGGATGTAACGGCAATGCTCAAGGAGATCAGGCATGAAACTGACCATTTCGAGAAACAAAGTTTTCTCCAAAAAGGGGCAGTCACCAATCAAAAAGTCTCTGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCACTGATAGAATCGTCATCGTCATCATCTTTTTCCTAA 3270 0.4116 MSSNAITLFILFLNISLFPSVYTLNQEGLSLLSWLSTFNSSDSATSFSSWNPSDKSPCKWDYIRCSKNGFVSDIMITSINLRGSFPTQLLSFGHLTTLVISNGNLTGEIPSSVGNLSSLVSLDLSFNALSGTIPSEIGKLPNLQWLRLNSNSLHGEIPTEIGNCSKLRQLELYDNQFSGKIPGEIGHLKDLEMFRAGGNQGIHGEIPMQISNCKALTLLGLADTGISGEIPSSIGELKNLKTLSVYTANLTGHIPPEIHNCSALENLFLYENQLSGNIPYELGSMKRLRRVMLWQNNLTGTIPESLGNCTNLVVVDFSLNSLEGELPVTLRNLLLLEELLLSDNNISGEIPSFIGNFSRLKQLELDNNRFSGKIPPVMGQLKELTLFFAWQNQLYGSIPTELSNCEKLEALDLSHNFLTGSIPSSLFHLENLTQLLLISNRLSGQLPRDIGSCTNLVRLRLGSNNLTGPIPPEIGLLSRLSFLELSDNLLSGEIPDQIGKCNQLQMLDLHKNQLQGTIPSSLEFLLVLNVLDLSTNRITGSIPQNLGKLTSLNKLIISGNSITGLIPQSLGLCENLQLLDISNNRISGSIPDEIGQLQGLDILLNLSWNSLTGPIPESFSNLSKLSNLDVSHNRLTGRLRILGSLDNLVSLNVSYNSFSGSLPDTKFFHDLPASAFAGNPELCISKCDMNRNHQGIKSVRNVIIYTFLGVILTAMFVTFGVIFALRIHGATSERECDEEIEMEWTFTPFQKLNFSINDIVTKLSDSNVVGKGCSGIVYRVETPMKQIIAVKKLWPIKDDEPPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYISNGSLCGLLHDKRLFLDWDARYKIILGAAQGLEYLHHDCIPPIFHRDIKANNILVGPQFEAFIADFGLAKLVNSSECSKASVIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPDGAHIVTWVNREIREKKREFTSILDQQLALQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHETDHFEKQSFLQKGAVTNQKVSVHCSSFSRSCEPLIESSSSSSFS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0898 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Lele28g0898 1089 SMART LRR_typ_2 549 572 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 429 453 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 477 501 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 285 309 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 645 678 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 116 139 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 140 164 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 573 597 IPR003591 -
Lele28g0898 1089 SMART LRR_typ_2 333 357 IPR003591 -
Lele28g0898 1089 Gene3D Transferase(Phosphotransferase) domain 1 843 1066 - -
Lele28g0898 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Lele28g0898 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Lele28g0898 1089 Gene3D Ribonuclease Inhibitor 325 424 IPR032675 -
Lele28g0898 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Lele28g0898 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 842 - -
Lele28g0898 1089 Pfam Protein kinase domain 766 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0898 1089 Gene3D Ribonuclease Inhibitor 136 223 IPR032675 -
Lele28g0898 1089 SUPERFAMILY RNI-like 293 661 - -
Lele28g0898 1089 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Lele28g0898 1089 Gene3D Ribonuclease Inhibitor 224 324 IPR032675 -
Lele28g0898 1089 Gene3D Ribonuclease Inhibitor 425 695 IPR032675 -
Lele28g0898 1089 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Lele28g0898 1089 SMART serkin_6 763 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0898 1089 ProSiteProfiles Protein kinase domain profile. 763 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0898 1089 PANTHER RECEPTOR-LIKE PROTEIN 55 432 1044 - -
Lele28g0898 1089 SUPERFAMILY Protein kinase-like (PK-like) 746 1047 IPR011009 -
Lele28g0898 1089 Gene3D Phosphorylase Kinase; domain 1 728 842 - -
Lele28g0898 1089 Pfam Leucine Rich Repeat 604 622 IPR001611 GO:0005515
Lele28g0898 1089 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Lele28g0898 1089 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Lele28g0898 1089 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Lele28g0898 1089 Gene3D Ribonuclease Inhibitor 29 135 IPR032675 -
Lele28g0898 1089 SUPERFAMILY RNI-like 77 371 - -
Lele28g0898 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Lele28g0898 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1057 - -
Lele28g0898 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0898 Lele-ChrLele28 5791616 5795023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0898 22 1059 Receptor kinase-like Gene Family AT5G56040 47.966 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele28g0898 Pkinase 1.7e-40 CL0016