Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0894 ATGCAGTGCTCTCGCAGCACAAAACCTTGGCTGAACAACGCAAAAAAGCGCAGTGTGATCGAAGGTTGCGTTAAAAAAATGGTGGTGCTTATTGATCGCGTGGCAATACCTAGAAGGGAGGAAGCTTTTGAAAAAGCAGAGAAGCTACTCTCGGCTTTAGAATCTGAATATCCGACATTCATAAAGTCAATGCTTCCGTCGCATGGTCTTTCAGTCCAGTTCTGCAAGAGTAACCTTCAAAAGCGGGACGAAATGATTACTTTGATAGATGAAGATGGGGATGAGTATCCCACAGTGTATTTGTCTCGTAAAACTGGACTCAGCGGTGGATGGAAAGGTTTTGCGGTTGCTCATAACCTTGCTGATGGGGACGCATTAGTTTTTCAGTTAGTCAGACTTGCAGCATTCAAGAGTGAAGAGTCCTGCTCCTACAGAGGGCAATTAGCTGTAAATGAATTGCACTTGGAGCTTTTTGAATCAATCAAGACGAATCTTTCCGATGAAAATAATGCCCAGAAACTCAAGATTCAAAGAGTCAAGACTCATGAGTTGTGCAATCAGGAATTACCACGTGTCAAGACCATGGAGTAA 591 0.4332 MQCSRSTKPWLNNAKKRSVIEGCVKKMVVLIDRVAIPRREEAFEKAEKLLSALESEYPTFIKSMLPSHGLSVQFCKSNLQKRDEMITLIDEDGDEYPTVYLSRKTGLSGGWKGFAVAHNLADGDALVFQLVRLAAFKSEESCSYRGQLAVNELHLELFESIKTNLSDENNAQKLKIQRVKTHELCNQELPRVKTME 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0894 196 SMART B3_2 60 139 IPR003340 GO:0003677
Lele28g0894 196 SUPERFAMILY DNA-binding pseudobarrel domain 53 132 IPR015300 -
Lele28g0894 196 CDD B3_DNA 58 132 IPR003340 GO:0003677
Lele28g0894 196 ProSiteProfiles B3 DNA-binding domain profile. 70 152 IPR003340 GO:0003677
Lele28g0894 196 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 40 138 IPR044837 -
Lele28g0894 196 Gene3D - 37 140 IPR015300 -
Lele28g0894 196 Pfam B3 DNA binding domain 70 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0894 Lele-ChrLele28 5767790 5770208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0894 30 137 B3 DNA Binding Superfamily AT5G42700 58.974 7.00e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele28g0894 B3 1.1e-10 CL0405