Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0867 ATGGCCAATATGTGCGGTACTCCTCCCTCCCTGCTCACCGCCTTCGCCATGCCTTCTGATTCCGATGATTTCTCCACCTTCTTCACCCACCTTCTCCATAACTCGCCCCCCTCTTCCGTCCTTTCCAAACCCAAAACCTCACCTCCCCCGTGGCTCCCTCCGCCAGTGGGGACCGCCGGGTTTGGCCATTCGGGTTCGGACTCGCCTCACAAAAATGGCAAGTCCGTTGGTTCTTCGGATGCAGTTTCTGATTCTTTCTACTTTTCTGATCCCTATGCTTACGTTCCGGGTGATGTGAAAGACGCTGCTGGAAATGAGTTCTTTTCGACTGGTATCGACGATTCTGATGAGAATACTTCCTTCAAAGAACATGGAATTTCGCCGGAGATTGAGCCCGGCGATTTCATTTGTGCCGTTGAGAAGAATGCTGAGGCGTCGCAGATAAAGCGAGTCCCAACACGTACTTCCTCAAAGAGGAGCAGAGCTGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATAAACGAGAAAATGAAGGCCTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCGATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGCTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGAGGACTGCAACAATCTATGACACTGCCTCAGACAGGGTTGAATTTCGAGGACTCCAATGCATATCAGAATTCTTCTCGCGGAACTGCCTCTGCTGAATGCTTGGTGCAACCCGACTTCAGTCTTCCAAAGCATTGCAGCATCTCGGATCAACCTGTGATCATGCCCTCCATCACAAACATGGGCAACCCAGATACCTCATCGTCTGGTTTCAGATTTCAAGTTACACAATTTGACCCTTCTACGTCATACAAGGTTGCAGTCTCTGATGGCGCACCACAGCTTCATTTGGACGCCACAAAGATTGAAAAGAGCGCATCTTCAGATAGGAACCTCGAAATTGCTGACCATGGCACGCCATGTCAGGATGTTCTTTCTGGGAGTGATGACAGTTTGACCAACCTGTGGGCTCTCTCCCACCTTATTGAAATGTACAAACTTCCTGTTTATCCATCGCATACCCATTATATATATTATAGACATTTTCTGGGCATTCTGCTTCTTCTCTTGGATTTCTTTTGGTGTCGTGAAGCCAAATCAGATGATGAATGA 1248 0.4712 MANMCGTPPSLLTAFAMPSDSDDFSTFFTHLLHNSPPSSVLSKPKTSPPPWLPPPVGTAGFGHSGSDSPHKNGKSVGSSDAVSDSFYFSDPYAYVPGDVKDAAGNEFFSTGIDDSDENTSFKEHGISPEIEPGDFICAVEKNAEASQIKRVPTRTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLMMRNGLSLHPMCLPGGGLQQSMTLPQTGLNFEDSNAYQNSSRGTASAECLVQPDFSLPKHCSISDQPVIMPSITNMGNPDTSSSGFRFQVTQFDPSTSYKVAVSDGAPQLHLDATKIEKSASSDRNLEIADHGTPCQDVLSGSDDSLTNLWALSHLIEMYKLPVYPSHTHYIYYRHFLGILLLLLDFFWCREAKSDDE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0867 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lele28g0867 415 Coils Coil 167 187 - -
Lele28g0867 415 CDD bHLH_AtPIF_like 161 223 - -
Lele28g0867 415 Gene3D - 156 220 IPR036638 GO:0046983
Lele28g0867 415 MobiDBLite consensus disorder prediction 36 77 - -
Lele28g0867 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Lele28g0867 415 SMART finulus 167 216 IPR011598 GO:0046983
Lele28g0867 415 MobiDBLite consensus disorder prediction 151 175 - -
Lele28g0867 415 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Lele28g0867 415 MobiDBLite consensus disorder prediction 42 56 - -
Lele28g0867 415 FunFam Basic helix-loop-helix transcription factor 156 219 - -
Lele28g0867 415 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 304 IPR031066 -
Lele28g0867 415 MobiDBLite consensus disorder prediction 157 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0867 Lele-ChrLele28 5590110 5593115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0867 161 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 86.842 1.15e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0867 HLH 2.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0867 28 5590110 5593115 Lele01g0846 01 4885758 4890800 CCT
Lele28g0867 28 5590110 5593115 Lele02g0823 02 5018610 5022267 CCT
Lele28g0867 28 5590110 5593115 Lele03g0839 03 4905029 4908464 CCT
Lele28g0867 28 5590110 5593115 Lele04g0844 04 5163602 5167247 CCT
Lele25g0874 25 5593273 5595504 Lele28g0867 28 5590110 5593115 hybridization
Lele26g0886 26 5672769 5675205 Lele28g0867 28 5590110 5593115 hybridization