Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele28g0866 | ATGATTTGTATCCAATTTTGTGTTGTCAATGATCGAGCTGATCTTAACGAGACTGTAGTTCTTATTCCTCCTGCGTGCTTCACTGTTGAGGTTCTCAATACATATTCACCCGCATTGTTTAGAGTATCTTTTAGTGCAGCCCCAATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCCGAAACCTTAGAATTCAACTGTGGATCCACCTCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAACGATAGTGATATACCTGAGTATTTACTTCCTTTGAGCGATATGAACCCACCATATATGAATTCTATAAACCATGGATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACCCAGAATGAAGCCAACAATAATCAGCAGAAAAGAGAACTTGGATGGACATCTCCAATTGGTGCAAGTGCTGCAGCTGGTCCAAGAGGAGAAGGAAGGCCCTTTGAACCAACCATTGTTCTTTCGGCTGACAATGTCAATTCCAGTCCTATGTATATGCACAACTCCAATTCTCACATGTCACCGAGTATCAACTTAAATGCTGGCTTGGCAGATGGTGGTGGTGATAACAGCCAGCATTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGATCATGTTCCACCTAGCATTATTTCTGGTCCTTTTCCTCCTCCTGGAAATAACAGCTTTGTGCTAGATGGCACTGATGCTAGGGCCAGCTGTTCTCTAGACTTGCGCCGTTCATCTTGTAAAAGGAAGTCCATTGAAGAAAATGTTGGACCATCTATGGATGGCGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGTAGTGCTTGGAACACTCTTCCAACTCGGGATAATACTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCTGATTCAAATGATGCAGGGAGAACAGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTTCTTCAAGCCAACAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGCAGCTTGATTAGGCATTCTAGTATGTCAAACTCTTCAATGTCACAAAGGTTCCCGCCTGTTGATAACTCCCTGGACTTGAGGGCTGCACCAATGGTAGATAATATAATTCCTCAAAGCCAGCCACTTGTGATCCATGTTCCTGCTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCAATCCTTTGTGCAGACAGGGATGACCAACCCCGGGAAGAATCAAACTCAAGAAGTATTTCTAGAAACATTTTTGATCGCCCAGTGTTTGTACCTGCAACTGATTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCAAGTTTAAGTATGTCAGGAAATGTTGCTTCTTCTTCACGGGCTGGATCAAATTCAGCTATCAATCAGTCATCTTCCTCAACGTGGGTTTCTCGTTCTAATCCTCCACAGTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTGTTTTCTCCTCCTTCTGAGACTGCTGAAAGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGGCCTACTGCCTCATCTGAAGCAAGGGTGTCATCATCTGGGGCTGGTGGCCAAGGACATCATCCATCACACCCAAGATCTTTGTGGATGGAGAGGCAAGCTGATGCGGAATTTGGAATTCCTTATTCTTTGCGAAGTTTGGCTGCTGCTGGGGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGTGGCCTTCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCGGATATTCATGACCGACACAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGCGAAGAAACCGTGATGAAACTTCTGAAACAGAAGAAGTACTCAGCTGAAACAGGATCTCAGGTTGAGGCTGAACCGTGCTGTGTTTGTCAGGAGGAGTATAATGACGGAGATGATATTGGAACCCTTGATTGCGGTCATGATTACCACAAAGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCCTGGCGTCGTGA | 2295 | 0.4405 | MICIQFCVVNDRADLNETVVLIPPACFTVEVLNTYSPALFRVSFSAAPMQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNDSDIPEYLLPLSDMNPPYMNSINHGWQNSSGWSLGEPSSSNTQNEANNNQQKRELGWTSPIGASAAAGPRGEGRPFEPTIVLSADNVNSSPMYMHNSNSHMSPSINLNAGLADGGGDNSQHLEHPNLHKSSGSVNDHVPPSIISGPFPPPGNNSFVLDGTDARASCSLDLRRSSCKRKSIEENVGPSMDGGSSSSSQHTESSAWNTLPTRDNTGSSLSRSASSEQVNARLGLGMGDEAPENLPDSNDAGRTGSFHRNLRLRISSSSQQDSIPPPAFSTGSLIRHSSMSNSSMSQRFPPVDNSLDLRAAPMVDNIIPQSQPLVIHVPALPRNMQSLRWNGSSSSSNSQSSSPILCADRDDQPREESNSRSISRNIFDRPVFVPATDLRNLVRNPTIRASGSASLSMSGNVASSSRAGSNSAINQSSSSTWVSRSNPPQYPRRLSEYVRRSLFSPPSETAESQNPSNNYSSLRSGPTASSEARVSSSGAGGQGHHPSHPRSLWMERQADAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSAETGSQVEAEPCCVCQEEYNDGDDIGTLDCGHDYHKDCIKQWLMHKNLCPICKTTGLAS | 764 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 489 | 529 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 353 | 391 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 277 | 315 | - | - | |
Lele28g0866 | 764 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 680 | 761 | IPR013083 | - | |
Lele28g0866 | 764 | SMART | ring_2 | 717 | 757 | IPR001841 | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 121 | 148 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 425 | 445 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 182 | 315 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 544 | 581 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 447 | 461 | - | - | |
Lele28g0866 | 764 | SUPERFAMILY | RING/U-box | 716 | 760 | - | - | |
Lele28g0866 | 764 | Pfam | Ring finger domain | 717 | 758 | IPR001841 | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 324 | 343 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 121 | 168 | - | - | |
Lele28g0866 | 764 | CDD | RING-H2_TTC3 | 716 | 758 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 489 | 589 | - | - | |
Lele28g0866 | 764 | FunFam | E3 ubiquitin-protein ligase MBR2 | 685 | 762 | - | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 425 | 461 | - | - | |
Lele28g0866 | 764 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 262 | 762 | IPR045191 | GO:0061630 | |
Lele28g0866 | 764 | ProSiteProfiles | Zinc finger RING-type profile. | 717 | 758 | IPR001841 | - | |
Lele28g0866 | 764 | MobiDBLite | consensus disorder prediction | 353 | 389 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele28g0866 | Lele-ChrLele28 | 5582052 | 5586724 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele28g0866 | 264 | 764 | C3H Transcription Factor Family | AT2G15530 | 39.006 | 8.52e-82 | 274 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele01g0861 | 01 | 4969567 | 4972831 | Lele28g0866 | 28 | 5582052 | 5586724 | CCT | |
Lele02g0841 | 02 | 5113822 | 5117121 | Lele28g0866 | 28 | 5582052 | 5586724 | CCT | |
Lele03g0856 | 03 | 4989269 | 4992533 | Lele28g0866 | 28 | 5582052 | 5586724 | CCT | |
Lele04g0858 | 04 | 5247846 | 5251121 | Lele28g0866 | 28 | 5582052 | 5586724 | CCT | |
Lele25g0873 | 25 | 5585800 | 5590462 | Lele28g0866 | 28 | 5582052 | 5586724 | hybridization | |
Lele26g0885 | 26 | 5664529 | 5669839 | Lele28g0866 | 28 | 5582052 | 5586724 | hybridization |