Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0866 ATGATTTGTATCCAATTTTGTGTTGTCAATGATCGAGCTGATCTTAACGAGACTGTAGTTCTTATTCCTCCTGCGTGCTTCACTGTTGAGGTTCTCAATACATATTCACCCGCATTGTTTAGAGTATCTTTTAGTGCAGCCCCAATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCCGAAACCTTAGAATTCAACTGTGGATCCACCTCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAACGATAGTGATATACCTGAGTATTTACTTCCTTTGAGCGATATGAACCCACCATATATGAATTCTATAAACCATGGATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACCCAGAATGAAGCCAACAATAATCAGCAGAAAAGAGAACTTGGATGGACATCTCCAATTGGTGCAAGTGCTGCAGCTGGTCCAAGAGGAGAAGGAAGGCCCTTTGAACCAACCATTGTTCTTTCGGCTGACAATGTCAATTCCAGTCCTATGTATATGCACAACTCCAATTCTCACATGTCACCGAGTATCAACTTAAATGCTGGCTTGGCAGATGGTGGTGGTGATAACAGCCAGCATTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGATCATGTTCCACCTAGCATTATTTCTGGTCCTTTTCCTCCTCCTGGAAATAACAGCTTTGTGCTAGATGGCACTGATGCTAGGGCCAGCTGTTCTCTAGACTTGCGCCGTTCATCTTGTAAAAGGAAGTCCATTGAAGAAAATGTTGGACCATCTATGGATGGCGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGTAGTGCTTGGAACACTCTTCCAACTCGGGATAATACTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCTGATTCAAATGATGCAGGGAGAACAGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTTCTTCAAGCCAACAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGCAGCTTGATTAGGCATTCTAGTATGTCAAACTCTTCAATGTCACAAAGGTTCCCGCCTGTTGATAACTCCCTGGACTTGAGGGCTGCACCAATGGTAGATAATATAATTCCTCAAAGCCAGCCACTTGTGATCCATGTTCCTGCTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCAATCCTTTGTGCAGACAGGGATGACCAACCCCGGGAAGAATCAAACTCAAGAAGTATTTCTAGAAACATTTTTGATCGCCCAGTGTTTGTACCTGCAACTGATTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCAAGTTTAAGTATGTCAGGAAATGTTGCTTCTTCTTCACGGGCTGGATCAAATTCAGCTATCAATCAGTCATCTTCCTCAACGTGGGTTTCTCGTTCTAATCCTCCACAGTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTGTTTTCTCCTCCTTCTGAGACTGCTGAAAGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGGCCTACTGCCTCATCTGAAGCAAGGGTGTCATCATCTGGGGCTGGTGGCCAAGGACATCATCCATCACACCCAAGATCTTTGTGGATGGAGAGGCAAGCTGATGCGGAATTTGGAATTCCTTATTCTTTGCGAAGTTTGGCTGCTGCTGGGGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGTGGCCTTCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCGGATATTCATGACCGACACAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGCGAAGAAACCGTGATGAAACTTCTGAAACAGAAGAAGTACTCAGCTGAAACAGGATCTCAGGTTGAGGCTGAACCGTGCTGTGTTTGTCAGGAGGAGTATAATGACGGAGATGATATTGGAACCCTTGATTGCGGTCATGATTACCACAAAGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCCTGGCGTCGTGA 2295 0.4405 MICIQFCVVNDRADLNETVVLIPPACFTVEVLNTYSPALFRVSFSAAPMQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNDSDIPEYLLPLSDMNPPYMNSINHGWQNSSGWSLGEPSSSNTQNEANNNQQKRELGWTSPIGASAAAGPRGEGRPFEPTIVLSADNVNSSPMYMHNSNSHMSPSINLNAGLADGGGDNSQHLEHPNLHKSSGSVNDHVPPSIISGPFPPPGNNSFVLDGTDARASCSLDLRRSSCKRKSIEENVGPSMDGGSSSSSQHTESSAWNTLPTRDNTGSSLSRSASSEQVNARLGLGMGDEAPENLPDSNDAGRTGSFHRNLRLRISSSSQQDSIPPPAFSTGSLIRHSSMSNSSMSQRFPPVDNSLDLRAAPMVDNIIPQSQPLVIHVPALPRNMQSLRWNGSSSSSNSQSSSPILCADRDDQPREESNSRSISRNIFDRPVFVPATDLRNLVRNPTIRASGSASLSMSGNVASSSRAGSNSAINQSSSSTWVSRSNPPQYPRRLSEYVRRSLFSPPSETAESQNPSNNYSSLRSGPTASSEARVSSSGAGGQGHHPSHPRSLWMERQADAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSAETGSQVEAEPCCVCQEEYNDGDDIGTLDCGHDYHKDCIKQWLMHKNLCPICKTTGLAS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0866 764 MobiDBLite consensus disorder prediction 489 529 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 353 391 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 277 315 - -
Lele28g0866 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 761 IPR013083 -
Lele28g0866 764 SMART ring_2 717 757 IPR001841 -
Lele28g0866 764 MobiDBLite consensus disorder prediction 121 148 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 182 197 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 425 445 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 182 315 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 544 581 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 447 461 - -
Lele28g0866 764 SUPERFAMILY RING/U-box 716 760 - -
Lele28g0866 764 Pfam Ring finger domain 717 758 IPR001841 -
Lele28g0866 764 MobiDBLite consensus disorder prediction 324 343 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 121 168 - -
Lele28g0866 764 CDD RING-H2_TTC3 716 758 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 489 589 - -
Lele28g0866 764 FunFam E3 ubiquitin-protein ligase MBR2 685 762 - -
Lele28g0866 764 MobiDBLite consensus disorder prediction 425 461 - -
Lele28g0866 764 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 262 762 IPR045191 GO:0061630
Lele28g0866 764 ProSiteProfiles Zinc finger RING-type profile. 717 758 IPR001841 -
Lele28g0866 764 MobiDBLite consensus disorder prediction 353 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0866 Lele-ChrLele28 5582052 5586724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0866 264 764 C3H Transcription Factor Family AT2G15530 39.006 8.52e-82 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0861 01 4969567 4972831 Lele28g0866 28 5582052 5586724 CCT
Lele02g0841 02 5113822 5117121 Lele28g0866 28 5582052 5586724 CCT
Lele03g0856 03 4989269 4992533 Lele28g0866 28 5582052 5586724 CCT
Lele04g0858 04 5247846 5251121 Lele28g0866 28 5582052 5586724 CCT
Lele25g0873 25 5585800 5590462 Lele28g0866 28 5582052 5586724 hybridization
Lele26g0885 26 5664529 5669839 Lele28g0866 28 5582052 5586724 hybridization