Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0859 ATGGAAGAAAGAGACTGTTGTTCGAGGGATTCCACGATCACGACGAGCAGAAGCAGCCCAGAGAAGCGGAAGCCACAGAGGCAACACCACCAAGCGGCGAAGGACAAGCCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCCAACAAGAGGTCAAGGATTTGGCTCGGTTCTTACACCACACCCATCGCCGCCGCACGCGCATACGACACCGCCGTTTATTACCTCCGAGGCCCTTCCGCTTCCCTCAACTTCCCCGAACTGTTGTTCCAAGACGACGACGCCCTCACCCGCGGCGACACGTCCTCCGATTCCATACGCAAGAAAGCCACCGAAGTCGGCGCTAGAGTCGACGCCCTCCAAACCGCCATTCACTCCTCCTCTCCCTCCACCAGTTCTACCCAAACCACCTCCGACAAACCCGACTTGAATGAGTACCCGCAACCCGAAGACTCCATCGAGGATTAG 492 0.5732 MEERDCCSRDSTITTSRSSPEKRKPQRQHHQAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVYYLRGPSASLNFPELLFQDDDALTRGDTSSDSIRKKATEVGARVDALQTAIHSSSPSTSSTQTTSDKPDLNEYPQPEDSIED 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0859 163 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Lele28g0859 163 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 160 - -
Lele28g0859 163 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 MobiDBLite consensus disorder prediction 128 163 - -
Lele28g0859 163 MobiDBLite consensus disorder prediction 1 37 - -
Lele28g0859 163 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Lele28g0859 163 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Lele28g0859 163 MobiDBLite consensus disorder prediction 129 151 - -
Lele28g0859 163 FunFam Ethylene-responsive transcription factor 2 36 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0859 Lele-ChrLele28 5537067 5537558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0859 10 147 AP2-EREBP Transcription Factor Family AT1G46768 60.563 6.77e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele28g0859 AP2 1.7e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0865 25 5546132 5551790 Lele28g0859 28 5537067 5537558 hybridization
Lele26g0879 26 5623089 5624018 Lele28g0859 28 5537067 5537558 hybridization