Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0845 ATGTCTTCCCTCAAGAAAGACGTCGATCGTATTAAAGGCCCGTGGAGTCCCGAGGAAGATGATGCCCTGCAGAGACTCGTTCAGAGTCACGGCCCTAGAAACTGGTCTCTAATCGGCAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCCGTTTGCGGTGGTGCAACCAGCTCTCTCCCAACGTCGAGCACCGGCCTTTCTCGCCCGAGGAGGACGAAACCATCGTCAGAGCACACGCCAGGTTCGGCAACAAGTGGGCCACGATCGCTCGCTTGCTCCTCGGTCGCACCGACAACGCCATAAAAAACCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCACCGATCCTTTCTATCCCGAATCCAATGACCACCAGCCTCTCAAAAGATCTGCCAGTGTTGGTGCCGCCCCGACCTTCTCCGGATTGTACTTGAGCCCGGGTAGCCCATCCGGATCCGATTTGAGCGATACCAGTTTGCCCGCTTTGTCTCCCACGCCGGTTATCAGACCCTTTGCGAGGAACGCAGCCCCCGTCCCCTGCACACGACAACCGGAAACCGCCACTTCCGCCCACGATCCGCCGACATCACTATGTCTATCACTGCCTGGATCCAATTCGCAAGAGGCCACCAACAACGGATCCGGATCGAATCAGCCTGTCAGCCCGACCCAATTACCGCCAAGTCCGCCGTCGCCAGTGGCTGCCGCACCGGCCGTCGGAGCATCAATACAGCAAGCGCGTTTTCCAGCTCCTACAAGTCAGAGATATGATCTGTTTGGTTGGGAGAAACAATTCTTCGGCGCCGAGTTTTTGACGGTGATGCAAGAGATGATAAAGAAGGAAGTGAGGAATTACGTGTCTGGGATGGAGCCGAAAGGTCTGTGTACTCAGACGGAAGCCATTAGAAACGCTGTGGTCAAGGGTTTCGGAATGGGCAGGGTCGAGTAA 957 0.5622 MSSLKKDVDRIKGPWSPEEDDALQRLVQSHGPRNWSLIGKSIPGRSGKSCRLRWCNQLSPNVEHRPFSPEEDETIVRAHARFGNKWATIARLLLGRTDNAIKNHWNSTLKRKCSAITDPFYPESNDHQPLKRSASVGAAPTFSGLYLSPGSPSGSDLSDTSLPALSPTPVIRPFARNAAPVPCTRQPETATSAHDPPTSLCLSLPGSNSQEATNNGSGSNQPVSPTQLPPSPPSPVAAAPAVGASIQQARFPAPTSQRYDLFGWEKQFFGAEFLTVMQEMIKKEVRNYVSGMEPKGLCTQTEAIRNAVVKGFGMGRVE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0845 318 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lele28g0845 318 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lele28g0845 318 FunFam MYB transcription factor 12 63 - -
Lele28g0845 318 Gene3D - 65 134 - -
Lele28g0845 318 MobiDBLite consensus disorder prediction 1 20 - -
Lele28g0845 318 MobiDBLite consensus disorder prediction 181 240 - -
Lele28g0845 318 CDD SANT 14 56 IPR001005 -
Lele28g0845 318 SMART sant 63 111 IPR001005 -
Lele28g0845 318 SMART sant 11 60 IPR001005 -
Lele28g0845 318 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Lele28g0845 318 Pfam Myb-like DNA-binding domain 15 73 - -
Lele28g0845 318 CDD SANT 66 109 IPR001005 -
Lele28g0845 318 PANTHER MYB PROTEIN-RELATED 12 209 - -
Lele28g0845 318 FunFam Transcription factor MYB44 66 112 - -
Lele28g0845 318 Gene3D - 11 63 - -
Lele28g0845 318 MobiDBLite consensus disorder prediction 184 224 - -
Lele28g0845 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lele28g0845 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0845 Lele-ChrLele28 5423238 5424194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0845 9 318 MYB Transcription Factor Family AT5G67300 51.875 2.03e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g0845 Myb_DNA-bind_6 7.4e-17 CL0123