Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0827 ATGGCTATGGAAGCTCTCAAGTCTCCCACCGCCGCTCCTCCTTCCTTCCCTTTCGAATTGGACTCCAATCTTCATTCCTTGGAGTCATGGACTAAGCGCAAGCGTTCCAAGCGTTCCCGTCTCGACCATCCTTCTTCATGCACTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTTGCTCGTGGTGGATCCGCCGTCTCCCCCACCAATCACGCCGCCTCCGACCGTCATAGTTCCCCTCAGGATAGTCTTCCCCCAGCAGCGCCTCTGCCCACACCAGATCCAACCACCGCCCCCAAGCTCAGTTACAAGTGCTCTGTTTGCGACAAGGCTTTCTCCTCTTACCAGGCTCTCGGAGGACATAAGGCCAGTCACAGGAAACTCACTGCGGGCGGCGCTCCAGGGGAAGATCAATCCACCTCCTCCGCTGTCACAAGTACTTCTGCAAACACCACCACAACTGCATCCAACGCGGCGGGTAAGTCCCACGTGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCCCTGGGAGGCCACAAGCGCTGTCACTACGACGGTGGCGCTGCCACCGCCGCGGCTGCTGGCAGCGGGAGCAGCGCTGTCACTGCCTCGGAAGGAGTTGGATCCACCCATACCGTTAGCCACAGCCAACGTGACTTCGACCTGAACCTTCCCGCTTTGCCCGACTTCTCGGCCATGTTCTTCCCTCACGGGGACGACGAGGTGGAGAGCCCTTTGCCAGTGAAGAAGCCGCGTCTTTTGATGGCGCCCAAAATCGAAGAAGCTCACTGA 804 0.5871 MAMEALKSPTAAPPSFPFELDSNLHSLESWTKRKRSKRSRLDHPSSCTSEEEYLALCLIMLARGGSAVSPTNHAASDRHSSPQDSLPPAAPLPTPDPTTAPKLSYKCSVCDKAFSSYQALGGHKASHRKLTAGGAPGEDQSTSSAVTSTSANTTTTASNAAGKSHVCSICHKSFPTGQALGGHKRCHYDGGAATAAAAGSGSSAVTASEGVGSTHTVSHSQRDFDLNLPALPDFSAMFFPHGDDEVESPLPVKKPRLLMAPKIEEAH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0827 267 Pfam C2H2-type zinc finger 105 129 - -
Lele28g0827 267 Pfam C2H2-type zinc finger 165 189 - -
Lele28g0827 267 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Lele28g0827 267 SMART c2h2final6 165 187 IPR013087 -
Lele28g0827 267 SMART c2h2final6 105 127 IPR013087 -
Lele28g0827 267 Gene3D Classic Zinc Finger 103 187 - -
Lele28g0827 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 187 IPR013087 -
Lele28g0827 267 MobiDBLite consensus disorder prediction 69 83 - -
Lele28g0827 267 MobiDBLite consensus disorder prediction 1 20 - -
Lele28g0827 267 MobiDBLite consensus disorder prediction 136 158 - -
Lele28g0827 267 SUPERFAMILY beta-beta-alpha zinc fingers 105 187 IPR036236 -
Lele28g0827 267 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Lele28g0827 267 MobiDBLite consensus disorder prediction 127 158 - -
Lele28g0827 267 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 232 IPR044653 GO:0003700
Lele28g0827 267 MobiDBLite consensus disorder prediction 68 98 - -
Lele28g0827 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0827 Lele-ChrLele28 5336883 5337686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0827 1 264 C2H2 Transcription Factor Family AT1G27730 50.558 8.87e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele28g0827 zf-C2H2_6 3.9e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0830 25 5346929 5347699 Lele28g0827 28 5336883 5337686 hybridization
Lele26g0841 26 5424899 5425714 Lele28g0827 28 5336883 5337686 hybridization