Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0825 ATGGAGACACTTGGAGTCATCCCTGATGCGGAAATGAGTTGCTTTCGAGGAATATTTGCCTCAGAAGAGCATGATTACTCGCCAAAATTTCTTGGCCAGAGCTCACTTCTGCTCGGGGAACATGATCGAATGCCCGTTGGAATAAAATCTGCATTTTGCTCTGCTCCTGAAGCTGGGGAAAATGAGTGCATGTTTAATTCTTTAGATGCTCTCAACCTAGATTTGCAGTTTATTTCTCAAGAAAGTAGTTTCATTAGTAACTGTAGTGGCGATGCTTTCTTTGTTGCCAACCTGGGTCTTATGAACTACTATCTCAATGATCCTAATCAGGTTCTAGCAAATGATGCTTGCATGTTCATGAATGTTTGCATGATGCATGAGAAAGACACTGGCACTTTCATCCCGTCACCAGGAAACGTTTTGGTGGACGAAACTGTTGGCTTTAATGAAGACAGGAGACGGGACATATTAGAGAATTCCAATCAAAGTCAAGCTGAGTTCACTACTTTTGCTGCCGAACAAATGCACCTGAAAAGGAAGTTTGATGTGCCAGAACTGGAGGCCTCAGCAGAAGATAAAATAAACATCAGCTCATCTGAGAACCAAGAGAAGAAACCTCGTGTTTCAAGAGATGTTCAAAAGAGTGAGAAGAATGCACAGCTAAAGAAGAACCAAAAGGTTGCAGGAAGTGGCTATGGGGCAGAAGAGACTGATACAGGATTACATGGACAGAGTTGTAGTAGTTACAGCTTAGAGGACGATAATGCTTCTCAGGAAAATAGTGGAGGAGCTTCCTCTGAGTCTAAATCACTTGTGACTCACAACACAAATGGGAAGACCAGAGCCAGTAGAGGATCAGCAACAGATCCCCAGAGCCTTTATGCCAGGAAAAGGAGGGAGAGAATAAATGAACGACTGAGAATCCTACAGAATCTTGTTCCAAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTTCAAATTAAGCTTTTAAGTTCTGATGACCTGTGGATGTATGCTCCAATTGCTTATAACGGTGTTGACATTGGATTGAATCTGAGCCGCAAGATTTCTCAGACAACGTGA 1119 0.4245 METLGVIPDAEMSCFRGIFASEEHDYSPKFLGQSSLLLGEHDRMPVGIKSAFCSAPEAGENECMFNSLDALNLDLQFISQESSFISNCSGDAFFVANLGLMNYYLNDPNQVLANDACMFMNVCMMHEKDTGTFIPSPGNVLVDETVGFNEDRRRDILENSNQSQAEFTTFAAEQMHLKRKFDVPELEASAEDKINISSSENQEKKPRVSRDVQKSEKNAQLKKNQKVAGSGYGAEETDTGLHGQSCSSYSLEDDNASQENSGGASSESKSLVTHNTNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGVDIGLNLSRKISQTT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0825 372 MobiDBLite consensus disorder prediction 240 290 - -
Lele28g0825 372 Gene3D - 288 344 IPR036638 GO:0046983
Lele28g0825 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 164 358 - -
Lele28g0825 372 MobiDBLite consensus disorder prediction 197 221 - -
Lele28g0825 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Lele28g0825 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 351 IPR036638 GO:0046983
Lele28g0825 372 Pfam Helix-loop-helix DNA-binding domain 296 336 IPR011598 GO:0046983
Lele28g0825 372 SMART finulus 292 341 IPR011598 GO:0046983
Lele28g0825 372 CDD bHLH_AtIND_like 287 349 - -
Lele28g0825 372 FunFam Basic helix-loop-helix transcription factor 287 344 - -
Lele28g0825 372 MobiDBLite consensus disorder prediction 192 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0825 Lele-ChrLele28 5316679 5318261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0825 252 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.966 1.65e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0825 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0828 25 5330580 5332171 Lele28g0825 28 5316679 5318261 hybridization
Lele26g0838 26 5407073 5408655 Lele28g0825 28 5316679 5318261 hybridization