Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0815 ATGGCGTCGACGTGTGCTTGGTTCAACTCCTCGTCAAGGCGTGCATTGAGAAGTGGTTTTGTGGCATTGTTTGTGAGGGAAAGATCCAAACTCCTCCGATTGTTTTCCAAGATGTTGTGTGCTTGTTCCGGGGAGCAATTTAAATTCGAAGAGCCGCCACAGTCGCCGGAGTCCATCGCAACAAGAGATTTCTCAGCCAGTGGACTCTCTTCGAGGACTGGAGATTGGGCATCTAAATTTGAGGACACCCAAGTAGATGAAGCTGAATCTACTCTTAAAGAAGCTCTCTCGTTGAACTACGAGGGGATTGACATTAAGAGTTTAACTCCAACAATGATTAGGGTCATTTCTGAGAGAAACAAGCAAATAAAACCACGTTCTAAGGCCGATCACGTGCTTCCCTCTATAATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCTATTCTGCTTAAAGCTAAATCGTTGGAGGCACTTGGACGCTACACTGAGGCTGCAAAGGAATGCAAAATAATTCTGGACACGGTTGATTCTGCGCTACCAGCTGGAATGCCTCGAGGTTTTGGCGAAGATTGTAAACTGCAAGAAATGTTCCACCGAGCATTGGAGTTGCTTCCAAAACTTTGGACCAATGCAGGGTTACTAGATGAAGCTATCACTGCATACTGGCGGGCTCTGATCAAGCCATGGAATTTGGAGCCACGAAGGCTGGCCACCATGCAGAAAGATTTAGCTATTAAACTCCTTTATGGTGGTGTTGAAATGAGCCTGCCATCACATTTGCATGTGTGGGGTGTAACAACGCCAAAAACTAACGTTGAAGAAGCTGTGCTGTTGTTAATGATACTCATGAGAAAGATACTAGTTCAGGAAATCGAATGGGATTCTGAACTATTAGATCATCTTGCATTTGCACTTTCAATTACGGGGATGTTTGAATCATTGGCAGATCATGTTGAGCAGATCCTTCCAGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTAGCCCTTTGTTATAGTGCCGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGTTTGTGGTAGTTCTGAGGCAAAGCATATACCCCATTTTCCTTCCTTTTTATTAGGAGCAAAGCTGTGTTCCCGAGATCCCAACCATGCTCATGAAGGCATTAAATTATCATGGAAAGTGATTGATCTAGCCAAGCATCAATGTGAGCACTTTCAGGGTCAAGGTCACAGATTTCTTGGTGTTTGCTATGGGGCTGCGGCTAGAATTTCTGTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCCTTAAACCAAGCTGCTGTAATTGGAAATTGGGACCCTGAAGTGATATTCAGCCTTGGATTGGAAAATGCTGTTCAAAGAAATCTGGTGGCAGCTTATGAGAACGCAGTTATGTACTCAGATATGGAATTAACAGAAAAAAAATTAGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTCGGTGCCTTGCTTGACGCAAAAACTTGTGTAGACAAAGCCCAGTGGATTGAATTCTTTTCTCCCAGAAGTTGGCATATTACAGGGGAATTGTTTGAAGCAAAATCATTATACAAGGAGGCCCTGGTTTCTTACACAATTGCGTTGTCGATAGAACCAGATTATGTTCCCAGCATCATTTCCACTGCAGAATTGTTGTTAAAAGCTGGTATGAAATCACTTCCAATCGCAAGAAGCTTTTTAATGAACGCTCTGCGGTTGGAACCCACAAACCATGATGCGTGGTTCAAACTTGGATTGATTTCAAAAATGGAAGGCTCATTACAGCAAGCGGCAGATTTCTTCCAAGCTGCCTATGAGCTAAAGCTTTCAGCTCCAGTTGAAAGATTTGTGGGAGTAATTGAGACTTCGAGTAATTGA 1929 0.4318 MASTCAWFNSSSRRALRSGFVALFVRERSKLLRLFSKMLCACSGEQFKFEEPPQSPESIATRDFSASGLSSRTGDWASKFEDTQVDEAESTLKEALSLNYEGIDIKSLTPTMIRVISERNKQIKPRSKADHVLPSIMSMHSVSLLLEAILLKAKSLEALGRYTEAAKECKIILDTVDSALPAGMPRGFGEDCKLQEMFHRALELLPKLWTNAGLLDEAITAYWRALIKPWNLEPRRLATMQKDLAIKLLYGGVEMSLPSHLHVWGVTTPKTNVEEAVLLLMILMRKILVQEIEWDSELLDHLAFALSITGMFESLADHVEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEAKHIPHFPSFLLGAKLCSRDPNHAHEGIKLSWKVIDLAKHQCEHFQGQGHRFLGVCYGAAARISVLDSERVICQRESLNSLNQAAVIGNWDPEVIFSLGLENAVQRNLVAAYENAVMYSDMELTEKKLEMEAWQDLATIYADLGALLDAKTCVDKAQWIEFFSPRSWHITGELFEAKSLYKEALVSYTIALSIEPDYVPSIISTAELLLKAGMKSLPIARSFLMNALRLEPTNHDAWFKLGLISKMEGSLQQAADFFQAAYELKLSAPVERFVGVIETSSN 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0815 642 ProSiteProfiles TPR repeat profile. 595 628 IPR019734 GO:0005515
Lele28g0815 642 PANTHER PROTEIN NPG1 38 101 IPR043376 -
Lele28g0815 642 SUPERFAMILY TPR-like 492 625 IPR011990 GO:0005515
Lele28g0815 642 Gene3D - 461 633 - -
Lele28g0815 642 ProSiteProfiles TPR repeat profile. 525 558 IPR019734 GO:0005515
Lele28g0815 642 SMART tpr_5 330 363 IPR019734 GO:0005515
Lele28g0815 642 SMART tpr_5 146 179 IPR019734 GO:0005515
Lele28g0815 642 SMART tpr_5 525 558 IPR019734 GO:0005515
Lele28g0815 642 SMART tpr_5 595 628 IPR019734 GO:0005515
Lele28g0815 642 SUPERFAMILY TPR-like 146 517 IPR011990 GO:0005515
Lele28g0815 642 Gene3D Tetratricopeptide repeat domain 77 386 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0815 Lele-ChrLele28 5238473 5241785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0815 487 634 Calmodulin-binding Proteins AT1G27460 60.135 1.59e-54 196
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0815 01 4720555 4731244 Lele28g0815 28 5238473 5241785 CCT
Lele02g0786 02 4807814 4811707 Lele28g0815 28 5238473 5241785 CCT
Lele03g0805 03 4720593 4724580 Lele28g0815 28 5238473 5241785 CCT
Lele04g0804 04 4941508 4951984 Lele28g0815 28 5238473 5241785 CCT
Lele25g0818 25 5264909 5267669 Lele28g0815 28 5238473 5241785 hybridization
Lele26g0830 26 5326974 5330059 Lele28g0815 28 5238473 5241785 hybridization