Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0813 ATGGAAGAATACCAATTCACAAGCACAACCATCATTACAGATCATCATCTTCATTGCTCTGTTGAGGCAGAAACTCAAAACATTCAGAGAATCATCTGCTTGCTTCTTCTACTGGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAACTAACAGCAGATAACCGAGTGTACCATAAAGCTTGCTTCCGATGCCATCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCCCACTTCGACCAAATTTTCAAAAGAACTGGTAGTCTTGACAAAAGTTTCGAAGGGACACCAAAAATTGCAAAACCAGAAAAACAAATTGACAGTGAGAAACCTGCAGTAACCAAGGCCTCAAGTTTGTTTGGCGGTACCAGAGAAAAATGTACTGGTTGTCAGAAAACAGTTTACCCAACTGAGAAGGTTACTGTAAACGGAACACCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGATGTATTATAAGTCCTTCGAACTACATTGCGCATGAGGGTAAGCTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGACAAGAGTGAAACAAATGACAAGATCATCAATGGGGAAGAAGTAGCTGCCTAG 693 0.4141 MEEYQFTSTTIITDHHLHCSVEAETQNIQRIICLLLLLGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKQIDSEKPAVTKASSLFGGTREKCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCIISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSETNDKIINGEEVAA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0813 230 SMART lim_4 43 95 IPR001781 -
Lele28g0813 230 SMART lim_4 143 195 IPR001781 -
Lele28g0813 230 ProSiteProfiles LIM domain profile. 142 202 IPR001781 -
Lele28g0813 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 209 - -
Lele28g0813 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 38 69 - -
Lele28g0813 230 ProSiteProfiles LIM domain profile. 42 102 IPR001781 -
Lele28g0813 230 CDD LIM1_SF3 40 102 - -
Lele28g0813 230 PANTHER OS06G0237300 PROTEIN 28 131 IPR045268 -
Lele28g0813 230 Pfam LIM domain 144 198 IPR001781 -
Lele28g0813 230 Pfam LIM domain 44 97 IPR001781 -
Lele28g0813 230 MobiDBLite consensus disorder prediction 206 222 - -
Lele28g0813 230 CDD LIM2_SF3 144 204 - -
Lele28g0813 230 Gene3D Cysteine Rich Protein 139 208 - -
Lele28g0813 230 Gene3D Cysteine Rich Protein 39 108 - -
Lele28g0813 230 ProSitePatterns LIM zinc-binding domain signature. 44 78 IPR001781 -
Lele28g0813 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 169 - -
Lele28g0813 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 70 110 - -
Lele28g0813 230 MobiDBLite consensus disorder prediction 206 230 - -
Lele28g0813 230 FunFam LIM domain and actin-binding 1 138 208 - -
Lele28g0813 230 FunFam LIM domain and actin-binding 1 38 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0813 Lele-ChrLele28 5226086 5228907 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele28g0813 LIM 6.1e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0816 25 5254527 5256773 Lele28g0813 28 5226086 5228907 hybridization
Lele26g0828 26 5314101 5317763 Lele28g0813 28 5226086 5228907 hybridization