Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0800 ATGCTGCTCCACCAGAGAAACTCTTTGCTGAGATCTAATACTTCTCCCTTTTCCGATTCTCAAATGCTCACTTTCTCTTCTCCCAAATCGGAGCCTCAGTTAATGGACAATGCCTCCCCGAATGCCGCATTTCCCTTTCCCTATCACCAACTAGCTGCTTACACCAGGAATACAGGTTACGGCTCTGGAGGCATGCACGGGGTTTTAACAACAACCAGAGGGCCATTCACTCCGTCCCAGTGGATGGAGCTGGAACACCAGGCCTTGATCTACAAGTACATAACTGCAAATATGGCCGTACCTTCTCATCTCCTCATCCCTATCAGAAAAGCTCTTGATTCTGCTGCCTTCAGTAACTTTTCCAACGGACTTCTCAGACCCAATGCACTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACACTGATCCTGAACCGGGAAGGTGTAGGAGAACTGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTGGACCAGAAGTACTGTGAGCGCCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCTCTGGCGCAACCACTACCAATAATGCCTCAAAGCTCATCCCTAACGCTTCCTCCTCTGCCTCAGTAGTGGTGCCAGGCAATGCTGCGTCCAATACCCTTTCCTTTGCCCATCATCAATCCAAGAATTTGCAGCCTCTTCCATCTCATACTTCTGCTCCAACCAACATCGACAGAATGTTCATGAACAACAAGGAGAATGCTAATGAGAGAGTGCAGGACGGTTCTGCTCTTCCAATGCTGCCTCCGACCCTTGATCTGAAGCCCAAGGAAAACCCTTTCATGATACAAAAAGAGCAAATCCCATACCAAGAATCGTCAAGGAATGAGTTTGGGCTTGTCACTTCTGACTCCCTACTTAACCCTTCTCATAAAAGCTTTGGTTCTTCACAAAACCCCTCTTATAGAGACACAGAGTCACAGCAATCCCTTCGTCATTTCATGGATGACTGGCCCAAACTTGACGTGCAATCAGATAGGACCCAGCTTTCAATATCTATCCCCATGGCCTCCTCAAATTTCATGCCATCCACTTCCTCTCCTACCAATGAAAAAGTCACATTGTCACCTCTTCGACTATCAAGGGAGCTAGATCCAATTCAAATGGGTTTGGGGGTGGGAATCGGTCTGAATGAATCAAGTAATAGGCAGGCAAATTGGATTCCAATTACTTGGGAAAGTTCCATGGGAGGTCCTCTTGGTGAGGTTCTTCATCTTAGTAACAACACAAGTGATTGCTCCAAGAACTCATCTGCTCTTAACCTCATGACAGATGGGTGGGAAAATAGTTCTTCATTAGGTTCATCTCCTACGGGAGTCTTGCATCAGACCGCGTTCGGATCAGTTTCCAATAGCAACTCAGGGAGCAGTCCGGTGGCTGAGAATAATAAAGGACTCGAAGGGGCCAGCTTGTGCAATGACCTGCTTGGTTCCACTCTTGGCAATTCCTCCTCTTTGCCCAACTTGTAA 1545 0.4809 MLLHQRNSLLRSNTSPFSDSQMLTFSSPKSEPQLMDNASPNAAFPFPYHQLAAYTRNTGYGSGGMHGVLTTTRGPFTPSQWMELEHQALIYKYITANMAVPSHLLIPIRKALDSAAFSNFSNGLLRPNALGWGGFHLGFSNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVSGATTTNNASKLIPNASSSASVVVPGNAASNTLSFAHHQSKNLQPLPSHTSAPTNIDRMFMNNKENANERVQDGSALPMLPPTLDLKPKENPFMIQKEQIPYQESSRNEFGLVTSDSLLNPSHKSFGSSQNPSYRDTESQQSLRHFMDDWPKLDVQSDRTQLSISIPMASSNFMPSTSSPTNEKVTLSPLRLSRELDPIQMGLGVGIGLNESSNRQANWIPITWESSMGGPLGEVLHLSNNTSDCSKNSSALNLMTDGWENSSSLGSSPTGVLHQTAFGSVSNSNSGSSPVAENNKGLEGASLCNDLLGSTLGNSSSLPNL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0800 514 MobiDBLite consensus disorder prediction 172 205 - -
Lele28g0800 514 PANTHER GROWTH-REGULATING FACTOR 5 21 365 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele28g0800 514 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele28g0800 514 Pfam WRC 144 186 IPR014977 -
Lele28g0800 514 MobiDBLite consensus disorder prediction 191 205 - -
Lele28g0800 514 MobiDBLite consensus disorder prediction 1 34 - -
Lele28g0800 514 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
Lele28g0800 514 Pfam QLQ 75 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele28g0800 514 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0800 Lele-ChrLele28 5136480 5139414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0800 3 472 GRF Transcription Factor Family AT2G22840 44.000 2.75e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele28g0800 WRC 4.6e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0801 25 5138629 5141464 Lele28g0800 28 5136480 5139414 hybridization
Lele26g0813 26 5201840 5205096 Lele28g0800 28 5136480 5139414 hybridization