Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0797 ATGGAGGACGACAGTGGAACTTCTGGGTCAGTTGTTAAAGTTGGCTGTGGAGATTTACATTCCCTCGGCTTATCCGTGAGTCCTGGTTCACAGTCTAGCTGTGTAACTGTTCCACAGCAGATTTCACCCTCTGCCACTGACGTGGTCGCAATGGAAGCAGCCAAGAAGAGAGGACATGGAAAGTTGGGCCAGAAACAGCCTGTGCATAGGAAGTCGATCGACACTTTCGGCCAGAGAACGTCTCAGTTCCGAGGCGTTACAAGGCACAGATGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGTTGTAAGAAGGAAGGGCAGACGAGGAAAGGAAGACAAGAGAAAGCTGCAAGAGCCTATGATCTTGCAGCCCTCAAGTACTGGGGACCCTCAACCCATATTAACTTTCCGGCTGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAGTACGTTGCCCACTTGAGAAGGCATCATCAGCATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCAGGAAACAAGGACCTTTATCTTGGAACATTCAGCACTCAGGAGGAAGCAGCTGAAGCATATGACATAGCTGCAATCAAGTTTCGAGGTGTGAACGCAGTGACTAACTTCGACATATCTAGGTACGACGTGGACAGGATCATGGCCAGCAATACCCTTCTTGCCGGCGAGCTTGCTCGGCGAAACAAAGATAGCGAGCCGAGAGTGGAAGCCATTGAGTACAATGTAACATCGAACCAGAGCAATGTGGAAGCGGTTCAAACCCAAAGGAACAAGAGCGACAACGACGACAACAACAACAACGGTTCCGATTGGAAGATGTTGTATACTCCAAATGGCTGTGACCAGAAAACCGCGAACTGCGGAAATTACAGGAATTCGGCAATGTCTGTGGCCCTACAGGATCTAATTGGGATTGACTCAGCAGCGAGCCCTTTTGCATTATTGATCTTTTGCTTTTATGAAGTTGCTGTTCTACTTGTTCCAGCTAAGTACAAGAACCAGCTCAATATGTTTCCCAATAATGCGAAAAAAGAAACAGAGGCTTTCTCGATTGACCACACCGCATCGTTTTATTTCCAATACTTGTTCCTCAATCTGCACAACGCAATCATTGCTTTAACCTTTTTCTCACGAGGCAGAGAAGGCTCCATTCCATTCCCCTGGTTTATTTAG 1194 0.4698 MEDDSGTSGSVVKVGCGDLHSLGLSVSPGSQSSCVTVPQQISPSATDVVAMEAAKKRGHGKLGQKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQEKAARAYDLAALKYWGPSTHINFPAELEEMKNMSRQEYVAHLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVDRIMASNTLLAGELARRNKDSEPRVEAIEYNVTSNQSNVEAVQTQRNKSDNDDNNNNGSDWKMLYTPNGCDQKTANCGNYRNSAMSVALQDLIGIDSAASPFALLIFCFYEVAVLLVPAKYKNQLNMFPNNAKKETEAFSIDHTASFYFQYLFLNLHNAIIALTFFSRGREGSIPFPWFI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0797 397 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 ProSiteProfiles AP2/ERF domain profile. 82 211 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 CDD AP2 159 213 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 14 24 IPR000408 -
Lele28g0797 397 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Lele28g0797 397 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Lele28g0797 397 MobiDBLite consensus disorder prediction 253 277 - -
Lele28g0797 397 SMART rav1_2 158 217 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 274 - -
Lele28g0797 397 Pfam AP2 domain 158 203 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Lele28g0797 397 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677
Lele28g0797 397 SUPERFAMILY DNA-binding domain 159 213 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0797 Lele-ChrLele28 5109194 5111976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0797 3 238 AP2-EREBP Transcription Factor Family AT4G37750 62.626 3.74e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele28g0797 AP2 6.4e-06 CL0081