Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0796 ATGGGTGGGCATGAAAATGCCATGGGGTTTCAACATGGACAAGACACAACAATCCTGAATTGCACGTCGTGGGGAGTGAGCGCCAATGTTTCTGAGATCGCAATGAGCTCTGTGTCTATGACCAAGCCTCCTATTGCGACTAATCAATTTCTTGGGTCTTCTTCTTCCACCTGGGATCCTCTTGTTTCTCTGGGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGGTTCTCACAGTGAGTTTGGCAGCTCATCTTACCCTCTTGTGTTGGAAAATCAGGGAATGAGTAGCACATCTCATCTTGTTCAATATATGTCCGATTCTAATTTCGATGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCACAACATGGGTGTTCTGATTTAGCTAATACAGGGTATGGCCCAAGTTATAACCAGAACGAGGAGGCAGCCAAGAAAAGGGCTCCATTAAATGGTTCACAATCTCAGCTTGAGGATCCAACTACTGAAGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTCGATCACAATCCTACGTTCATTCCAAACAAGAATGCTGAAGGGGAACCAACGAAGGATTTTTCTGGGAAGAGCTCCGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAGAGTGGAGAAGCTCCCAAAGAAAATTTCATCCATGTGAGGGCTCGAAGAGGTCAAGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATTTAGAACGGATCCTATCGAAAGATATTCTTCAGTCGCGCATCGCAAATGGGACTATTGGTGGATATGGGTTGAACTCCTCTCCCTCGTTCCCTGCTAGAAGTTTTCAGGGAACTCTTCCAGGATCAGGCATACCCAACACATCCACACCATTCCCTCCTTTGCCTCAGAGTGTTTTGGAGCATGAGTTCCAAAACTTGTACGGAATGGGATACGATTCCGGTACAGCTCTTGACAATGCAGGACCCAGTGGTAATACTCGGAAACCTTTTGCTTAA 1281 0.4528 MGGHENAMGFQHGQDTTILNCTSWGVSANVSEIAMSSVSMTKPPIATNQFLGSSSSTWDPLVSLGQTQTFGGSSMGSHSEFGSSSYPLVLENQGMSSTSHLVQYMSDSNFDVPSYASGSFSEMVGSFPQHGCSDLANTGYGPSYNQNEEAAKKRAPLNGSQSQLEDPTTEEGATGSAPNGSRRKRGLDHNPTFIPNKNAEGEPTKDFSGKSSDGAKEQDEKKQKVEQNNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQFLSMKLATVNPELNFDLERILSKDILQSRIANGTIGGYGLNSSPSFPARSFQGTLPGSGIPNTSTPFPPLPQSVLEHEFQNLYGMGYDSGTALDNAGPSGNTRKPFA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0796 426 MobiDBLite consensus disorder prediction 138 256 - -
Lele28g0796 426 Pfam Helix-loop-helix DNA-binding domain 269 317 IPR011598 GO:0046983
Lele28g0796 426 Gene3D - 263 337 IPR036638 GO:0046983
Lele28g0796 426 FunFam Basic helix-loop-helix transcription factor 263 333 - -
Lele28g0796 426 MobiDBLite consensus disorder prediction 229 253 - -
Lele28g0796 426 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 360 IPR024097 GO:0006355
Lele28g0796 426 SMART finulus 272 322 IPR011598 GO:0046983
Lele28g0796 426 MobiDBLite consensus disorder prediction 203 228 - -
Lele28g0796 426 CDD bHLH_AtBPE_like 256 339 - -
Lele28g0796 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Lele28g0796 426 MobiDBLite consensus disorder prediction 156 176 - -
Lele28g0796 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 323 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0796 Lele-ChrLele28 5098256 5100405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0796 1 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.627 5.18e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0796 HLH 4.5e-06 No_clan