Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0794 ATGAAGATAGGAGCTCCTTGCTTTGTACCCATTGTTCCTGTCTCAACATATCAGCAGGCATTGCCTTACCAAGCGCCCAGCGAAGCATTTTGCAAGAGCCAAGTTCTTCGTCGCCGCCGTCCCTGTTCTCCTCCTTCGTCGTCTCCGGGAGGTGTCTCGGATCCACATTCCGACATGGCAGATCAGTACACTCTTGGTTGGATCTTTTTCTCCGGTTTGCTCGCCTTGGTTGCCCTCTACAATTTGGTTTTTGCCAGGAAGAGCCGTATTGTTTCCTCCGCGGCTTCACCTCAGTGCATGAATAGCATAACCATAGCTGCCGGAGAATGCGGATCCATTGACAGCTGCGATAAGGTCGACGTCATTATCGTCGGAGCTGGTGTTGCTGGCTCTGCTCTGGCTCACACTCTTGGCAAGGATGGACGCCGAGTACATGTTATAGAAAGAGATCTGAGGGAGCCTGACCGAATTGTTGGGGAGTTGCTACAACCTGGGGGCTATCTCAAACTAATTGAGCTCGGGCTCGAAGATTGTGTGCAGGAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTACAAGGATGGAAGAAATACTCGACTCCCTTATCCATTGGAGAAGTTTCACTCAGATGTTTCTGGAAGAAGCTTTCACAATGGACGTTTTATTCAGAGGATGAGGGAGAAGGCTGACTCCCTTCCCAATGTACTATTAACGGAAGGAACAGTTACTTCCCTACTTGAAGAGAATGGGACAATTAAAGGTGTGCATTATAAGACCAAAGATGGCCAAGAATTTTCAGCATATGCTCCTCTCACCATTGTTTGTGATGGGTGTTTTTCAAACTTGCGCCGTTCTCTCTGTAATCCTAAGGTGGACGTTCCCTCTTGTTTTGTTGGTTTGATATTGGAGAACTGTGAACTTCCATATGCAAACCATGGCCATGTTATACTAGCAGATCCTTCACCAATTTTGTTCTATCCTATAAGTAGTACGGAGATTCGCTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCTTCAGTTTCAAATGGTGAAATGACCAAGTATTTGAAGACAGTGGTAGCTCCACAGGTCCCCTCTGAGCTTTATGATGCCTTCATAGCTGCGGTGGACAAAGGCAGCGTGAGGACAATGCCAAACAGAAGCATGCCGGCAGCCCCTTATCCTACTCCCGGAGCCCTTCTGATGGGAGATGCGTTCAACATGCGCCATCCTCTTACTGGGGGTGGAATGACTGTGGCACTGTCTGACATAGTGGTGCTTCGGAATCTTCTCAGGCCTTTGCGTGACCTAAATGATGCATCCACGCTTTGCAAGTATCTCGAGTCCTTCTATACCCTGCGGAAGCCAGTGGCATCCACCATAAATACGTTGGCAGGAGCCCTATACAAGGTTTTTAGCGCATCTCCTGATAAGGCGAGGAGTGAAATGCGCCAGGCATGCTTTGATTATCTAAGTCTCGGAGGTGTATTCTCGGAAGGGCCAATTTCTTTGCTTTCTGGATTGAACCCCCGCCCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATCTACGGTGTTGGCCGTTTGTTGATTCCATTTCCGTCGCCCAATCGAGTTTGGATCGGAGCACGATTGATATCCGGTGCTTCAGGAATAATCTTCCCCATAATTAAGGCAGAAGGAGTTCGCCAGATGTTCTTCCCTGCGACCGTCCCAGCTTATTACAGGACCCCTCCGTCTAAACAGGAGTGA 1758 0.4841 MKIGAPCFVPIVPVSTYQQALPYQAPSEAFCKSQVLRRRRPCSPPSSSPGGVSDPHSDMADQYTLGWIFFSGLLALVALYNLVFARKSRIVSSAASPQCMNSITIAAGECGSIDSCDKVDVIIVGAGVAGSALAHTLGKDGRRVHVIERDLREPDRIVGELLQPGGYLKLIELGLEDCVQEIDAQQVFGYALYKDGRNTRLPYPLEKFHSDVSGRSFHNGRFIQRMREKADSLPNVLLTEGTVTSLLEENGTIKGVHYKTKDGQEFSAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLILENCELPYANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSVSNGEMTKYLKTVVAPQVPSELYDAFIAAVDKGSVRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDASTLCKYLESFYTLRKPVASTINTLAGALYKVFSASPDKARSEMRQACFDYLSLGGVFSEGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPNRVWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPSKQE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0794 585 Gene3D - 110 474 IPR036188 -
Lele28g0794 585 PANTHER SQUALENE MONOOXYGENASE 102 581 IPR040125 GO:0004506|GO:0016126
Lele28g0794 585 Pfam NAD(P)-binding Rossmann-like domain 123 149 - -
Lele28g0794 585 FunFam Squalene monooxygenase 2 113 493 - -
Lele28g0794 585 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 397 412 - -
Lele28g0794 585 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 - -
Lele28g0794 585 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 120 142 - -
Lele28g0794 585 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 412 428 - -
Lele28g0794 585 Pfam Squalene epoxidase 270 542 IPR013698 GO:0004506|GO:0016020|GO:0050660
Lele28g0794 585 SUPERFAMILY FAD/NAD(P)-binding domain 118 493 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0794 Lele-ChrLele28 5071075 5075986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0794 102 585 Miscellaneous Gene Families AT1G58440 79.424 0.0 814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0799 01 4634526 4635833 Lele28g0794 28 5071075 5075986 CCT
Lele02g0771 02 4706746 4708059 Lele28g0794 28 5071075 5075986 CCT
Lele03g0792 03 4631975 4634497 Lele28g0794 28 5071075 5075986 CCT
Lele04g0789 04 4837115 4838428 Lele28g0794 28 5071075 5075986 CCT
Lele25g0795 25 5077841 5083163 Lele28g0794 28 5071075 5075986 hybridization
Lele26g0807 26 5136283 5140092 Lele28g0794 28 5071075 5075986 hybridization