Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0790 ATGAAAGAAGACGAGAAGATCAGTAATGGTAAGTTGAACAAAGGGCGGTCCATAGAAATTAAATACGCATCGAAGAAGCTAAGAGAGAACATGGGGAGGGCTCCTTGCTGCGATAAAGCGAACGTGAAGAAAGGACCTTGGTCCCCAGAAGAAGATGCCAAACTCAAGTCCTACATCGAACAGCATGGAACTGGTGGAAACTGGATCGCTTTGCCTCAGAAGATCGGGCTAAAGAGATGTGGGAAGAGCTGTCGACTGAGGTGGCTAAACTATCTTCGACCGAATATCAAGCATGGGGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTACGTTAGTATTGGGAGCAGGTGGTCGGTGATAGCAGCACAATTGCCAGGAAGAACAGACAACGACATAAAGAACTACTGGAACACAAAACTGAAGAAGAAGCTTCTGGGTAATAATAAGCACCGTAAAGATCAACAATCACGTAGTAAGAGCAAGCACGAAGGAGCTAATAGAATCATCACCTCTCCCAATTCCTTATTAGTTCCTGAAAATTCTTCTACAAATACTATTTTTCCACAACCATATTGGCCACTAATGCCCGTGATATCTCCCTTGCAATATTCAAATCAAGAGCCATGTTTCAACGATCAAGATTCCATCAAAAAGTTGCTCATGAAACTGGGAGGAAGATTTTCCGATGTGGATAATGATCACAATTATTATCATCCTACCCTCCATGCTTTGAATATTAATCCCAATCTATTCCCAGATCATGGTACTCCCTGCACACAACCAGTAGTTTGTGAAGAACAACAAGGAAATATGGCTTCTTCTTCCTCTTGCATGATAAGCAACAATCAGATAGACTTGGGGCTAGAGACAGGAGGACTTGAGGAGATAGTATGCAGTAATAGTACTTATACTTATCCACAAAGATTAGATGGACTCGAACTGCTGTTTGGGGACGACGACGTGATGGTCAATGACAAGATAGCCCCACCTGCAGATACCAACTCTCTCATTTATCAATCTTTTGTTTCTTCCAATTACCAGGACATGCCACAACAATGTGCTTTCCCAGAGTTAAGGTTTAACCGGCCATAA 1101 0.4251 MKEDEKISNGKLNKGRSIEIKYASKKLRENMGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGNNKHRKDQQSRSKSKHEGANRIITSPNSLLVPENSSTNTIFPQPYWPLMPVISPLQYSNQEPCFNDQDSIKKLLMKLGGRFSDVDNDHNYYHPTLHALNINPNLFPDHGTPCTQPVVCEEQQGNMASSSSCMISNNQIDLGLETGGLEEIVCSNSTYTYPQRLDGLELLFGDDDVMVNDKIAPPADTNSLIYQSFVSSNYQDMPQQCAFPELRFNRP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0790 366 PANTHER OS09G0431300 PROTEIN 31 256 - -
Lele28g0790 366 SMART sant 43 94 IPR001005 -
Lele28g0790 366 SMART sant 97 145 IPR001005 -
Lele28g0790 366 Gene3D - 37 98 - -
Lele28g0790 366 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Lele28g0790 366 SUPERFAMILY Homeodomain-like 41 139 IPR009057 -
Lele28g0790 366 Gene3D - 100 172 - -
Lele28g0790 366 FunFam Transcription factor MYB36 100 169 - -
Lele28g0790 366 MobiDBLite consensus disorder prediction 147 170 - -
Lele28g0790 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 96 IPR017930 -
Lele28g0790 366 CDD SANT 101 143 IPR001005 -
Lele28g0790 366 Pfam Myb-like DNA-binding domain 44 92 IPR001005 -
Lele28g0790 366 Pfam Myb-like DNA-binding domain 99 141 IPR001005 -
Lele28g0790 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 147 IPR017930 -
Lele28g0790 366 FunFam Transcription factor RAX3 37 98 - -
Lele28g0790 366 ProSiteProfiles Myb-like domain profile. 39 92 IPR001005 -
Lele28g0790 366 MobiDBLite consensus disorder prediction 152 167 - -
Lele28g0790 366 CDD SANT 46 92 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0790 Lele-ChrLele28 5041518 5043299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0790 31 225 MYB Transcription Factor Family AT3G49690 64.039 1.12e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g0790 Myb_DNA-binding 2.6e-14 CL0123