Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0787 ATGCGTGGTGATTATCAATCTCTCTCTGTGAATTTCTTGGTCAAGGGACAAATTTCTGGAATTCATGTTGATTTTTTAAATGAAAAATGGGATTTATACATATTGTTGACTATAAGTGGTCCAAACTGTTGCTTAGTCGGATTGAGGTTGGTATTAGATTATTGGATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGTGGAAGGGCTAATTTCTTGTACTCTTCGGGAGGTGTTGGGTACGGAAGAAGTAGCAGCGGTGGGGGTGGTTCGAGTGTTGCTGCTCATCAATTGCCCATCAATACTTTTCATCTTCAGTCCGCTGCTTCTGACTGCTTTCATCAATCCGATCAGCCTCATCCCACCGTTAAAACTGAGGCCAACACCTCACACCATGCTCAGATTTTTCAGTATCCTCTTCTCAGAGGAAATCTTCACATGATGCACCACCAAGTAGCAGCTGGTGGAGACAGCTCCAACGAGGTTGAAGCTATCAAGGCTAAAATAATTGCTCATCCTCAGTATTCCAATCTTCTACAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGTTGGCGCGTCTGGCTGCTGTTCGCCAGGAATTTGAGGCAAGGCAGCGATCTTCATCCACTTCCAGGGAAGTTTCGAAGGATCCTGAACTGGACCAATTCATGGAAGCTTATTATGACATGCTTGTCAAGTATCGAGAGGAATTGACGAGGCCTATTCAAGAAGCCATGGATTTCATGCGCAGGGTCGAAACTCAACTCAATATGCTTTGCAATGGATCCGTCCGTATCTTCTCTGATGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAACTTAAGAACCACTTACTGAGGAAGTATAGCGGTTACTTAAGCAGCCTGAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCCAGGCAAAAGCTACTCAACTGGTGGGAATTACACTACAAATGGCCATATCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCAACAGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAAAACGCAACTCTCTATATGGATGGTCACTACATGCCTGATGGTCACTACCGTCTAGGCCCATGA 1278 0.446 MRGDYQSLSVNFLVKGQISGIHVDFLNEKWDLYILLTISGPNCCLVGLRLVLDYWMEEYNNNLSENNGGRANFLYSSGGVGYGRSSSGGGGSSVAAHQLPINTFHLQSAASDCFHQSDQPHPTVKTEANTSHHAQIFQYPLLRGNLHMMHHQVAAGGDSSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVLARLAAVRQEFEARQRSSSTSREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVETQLNMLCNGSVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0787 425 FunFam Homeobox protein knotted-1-like 2 332 394 - -
Lele28g0787 425 Pfam KNOX2 domain 219 265 IPR005541 GO:0003677|GO:0005634
Lele28g0787 425 SMART ELK_2 307 328 IPR005539 GO:0003677
Lele28g0787 425 ProSitePatterns 'Homeobox' domain signature. 365 388 IPR017970 GO:0000981|GO:0006355
Lele28g0787 425 ProSiteProfiles ELK domain profile. 307 327 IPR005539 GO:0003677
Lele28g0787 425 SMART KNOX2_2 215 266 IPR005541 GO:0003677|GO:0005634
Lele28g0787 425 Pfam KNOX1 domain 165 207 IPR005540 GO:0003677|GO:0005634
Lele28g0787 425 Pfam Homeobox KN domain 347 386 IPR008422 GO:0003677|GO:0006355
Lele28g0787 425 ProSiteProfiles 'Homeobox' domain profile. 327 390 IPR001356 GO:0003677
Lele28g0787 425 CDD homeodomain 339 391 IPR001356 GO:0003677
Lele28g0787 425 SMART KNOX1_2 164 208 IPR005540 GO:0003677|GO:0005634
Lele28g0787 425 Pfam ELK domain 307 328 IPR005539 GO:0003677
Lele28g0787 425 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 397 - -
Lele28g0787 425 Gene3D - 332 394 - -
Lele28g0787 425 SUPERFAMILY Homeodomain-like 328 402 IPR009057 -
Lele28g0787 425 MobiDBLite consensus disorder prediction 276 304 - -
Lele28g0787 425 SMART HOX_1 329 394 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0787 Lele-ChrLele28 5011127 5016092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0787 106 425 Homeobox Transcription Factor Family AT4G08150 70.000 5.32e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele28g0787 KNOX2 5.6e-25 No_clan