Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0785 ATGGTGATCGGAGAACTAGCTTGTTCGGTCCCCAACTTTCAGAGTTCCCAGTCCAACTTGCCTGATAATTCAACCATCTCATTGCCCGTTGATGGTTTAGCTATCCACTTACATGGCAATGCCGCTGATTGCGATTATCCACCTTCCATTGATCCCTCCACCGCGCTCCCCCCTTTTCTTTCCAATAATCTCACTCCCATTGATTTGGATTCGCTCTGCGAAGATTTTGACGCTTCTTTCGACGCTTTTTCCAGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCATGCGTTCCCGGTCACATGACTGGACAGAGTGTCCGTTCGCCCACCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAATATCAATACTCCGGCAGTGCATGCCCCGAGTATCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCCTCTCGTTACAGGACCCAGTTCTGCAAGGACGGAACAAGTTGTCGCCGCCGAGTGTGCTTCTTTGCTCACACTCCTGAACAATTGCGGCACCTAGCTAACGGGTCAGGCGAATCATCGGAGGGGTCGCCGATTTGTCACGCTTCCTTCGTTTCATCGCCTACATCAGTACTACAGCCGTCGCCCATCTCTTCATTGGCCGAGTCCCCGCCCACATCGCCCGGAAATCCCCGACACGTCTGGAGTGAAATAAGCGCCTCAATGTGTATTGTTCAAAGCGATAAGCCGACTTCAATTCGTGATCCTCATATGCCCGGTGCGTACGGTTCACCACATGGGATCCATATGGGTTCGGGGTTTGGTTCACCCCGTTGTTCGAATCAACGACTCAGGTATTTTAGCCTTCCTTCGACTCCGAATCGGACGGTGACGAAATCTGGGCTCGGTGCTCTGGACATGTGGGATCAAGGCCACGAAGAAGAACCTGCCATGGAAAGGGTCGAGTCGGGAAGAGAACTTAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCGTTCGGGCGAAGCAACACGCGGCTTTCAGGAATGTTCTGA 1074 0.5242 MVIGELACSVPNFQSSQSNLPDNSTISLPVDGLAIHLHGNAADCDYPPSIDPSTALPPFLSNNLTPIDLDSLCEDFDASFDAFSSDHFRIFEFKIRKCMRSRSHDWTECPFAHPGEKARRRDPRKYQYSGSACPEYRKGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDGTSCRRRVCFFAHTPEQLRHLANGSGESSEGSPICHASFVSSPTSVLQPSPISSLAESPPTSPGNPRHVWSEISASMCIVQSDKPTSIRDPHMPGAYGSPHGIHMGSGFGSPRCSNQRLRYFSLPSTPNRTVTKSGLGALDMWDQGHEEEPAMERVESGRELRAKMYAKLCKENSFGRSNTRLSGMF 357
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0785 357 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Lele28g0785 357 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Lele28g0785 357 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Lele28g0785 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 152 IPR000571 GO:0046872
Lele28g0785 357 PANTHER UNKEMPT FAMILY MEMBER 73 350 IPR045234 -
Lele28g0785 357 MobiDBLite consensus disorder prediction 218 237 - -
Lele28g0785 357 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
Lele28g0785 357 Gene3D - 128 190 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele28g0785 Lele-ChrLele28 4992641 4993714 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0785 77 229 C2H2 Transcription Factor Family AT5G12850 56.209 2.91e-54 187
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele28g0785 zf-CCCH 5.6e-06 CL0537