Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0770 ATGGAGAATGGTATGATTGGTGCTCCAATGGACATAGCTGGTCGAAGTTCTGCAGTTTTAGATGAACTTCCACTCATTGAGGGCTATTCATTTGACCAAACCCGAATCATGAATGGAATATCAATGCTTGCTGCTGGAATGCAAGATGAACTCATAAGTAATGTCCATTTAGATGTTCCTCTTATGAATCCTGTCTGCATGGCTGATCCTAATTTCTTGGTTCCATCTCAAGGAAAGAATTTTTTAGCCCCATGTTTCCAAAACAACAGTGTTTTTCAAGATCAACAGGCTGGAGCCACAGTCACTCCTGCTTCACTTGCTGCAAGATTTGGCCTTCAAGAAAACTTTGATAAATCAACAGCTCTGTCTCGTTCACTCTGTTCATTGGAGGCACTGGTACCATATATGTTAAGCAATTGGCAGGATCATTCAAACACTTTGCTTCCAACTTCTGGAGATTGTGTGTATGATGAAGTACCTCGTACTACTAGGTTCCAGTCTTATTCGTCCACAGCAAACCTGGATCCAAATGGATGGACATCTTCAAATGTTGCAGCAAACTTAACCCATCATGGGTATGAATATGATTGCCAGAATTTCAGGAGTGAGCTCTCATTAAGTCTAGCAACATCTCCCACCACAGGTCAGTGCTCAGAGGCGAGTTCTGATAGCTTGGAACAAGCTTCCTGTAGCAGTAGACATGTGAATTTTTCACAAGTGATATTGGGGTCCAGATATCTTACTGGGATTCAAGAAACACTTGCTCAAATTGCAAGGTATTCACTTGAAAATACAGAACATATAAATAATTGTTCAGTTGCTTGTAGTAGTAGAGCCAGAGCCAGAGCAGAAGGGAATATATCATCAACCTCAGATCTTCCATCCAGGAGAATGATAGAGACAACATATCACAAGGCAGATTCTATGTTTGAAGCTCAAGTGAATTCTTCATTTGCAGCACACGATGCTGCTGAATCAAAGAAATCTCAGCTTCTGACACTTCTACAACTGGTGGACAGTCGATATAATCAGTGTTTGGATGAGATTCATACTGTTGTATCAGCATTTCATGCTGCTACAGAGTTGGACCCGCAAGTTCATGCACAATTTGCCCTTCAGACAATCTCAATGTTGTACAAGGATTTGCGTGAGAGGATAAGCAATTATATCCTTTCCATGGGAGAAAAGTTGAACGACTCAGGCTCAGAAGAAGAGAAGGAAAGGTCAAAGGAAGCTTTATTCATCGAAAAGCACTGGGCTCTGCAGCAACTGAAAAGAAAAGAGCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCCGTTCTAAGGGCTTGGATGTTTCAGAATTTCCTCCACCCGTATCCAAAAGATGCAGAGAAGCAATTACTTGCTGTAAAAAGTGGATTGAGTAGAAGCCAGGTATCGAACTGGTTCATTAATGCCCGTGTAAGGCTGTGGAAACCTTTGATTGAGGAAATGTACGCAGAAATGAACAGAAGAAAGGCTCTTAGGAATGAAGGAGGCACGCAGAGCAGCGGGGTACGCTTGAGCAGTCACAGATTTAGTATGAATTGA 1587 0.4228 MENGMIGAPMDIAGRSSAVLDELPLIEGYSFDQTRIMNGISMLAAGMQDELISNVHLDVPLMNPVCMADPNFLVPSQGKNFLAPCFQNNSVFQDQQAGATVTPASLAARFGLQENFDKSTALSRSLCSLEALVPYMLSNWQDHSNTLLPTSGDCVYDEVPRTTRFQSYSSTANLDPNGWTSSNVAANLTHHGYEYDCQNFRSELSLSLATSPTTGQCSEASSDSLEQASCSSRHVNFSQVILGSRYLTGIQETLAQIARYSLENTEHINNCSVACSSRARARAEGNISSTSDLPSRRMIETTYHKADSMFEAQVNSSFAAHDAAESKKSQLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHAQFALQTISMLYKDLRERISNYILSMGEKLNDSGSEEEKERSKEALFIEKHWALQQLKRKEHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLSRSQVSNWFINARVRLWKPLIEEMYAEMNRRKALRNEGGTQSSGVRLSSHRFSMN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0770 528 CDD homeodomain 432 492 IPR001356 GO:0003677
Lele28g0770 528 Pfam Associated with HOX 240 387 IPR006563 -
Lele28g0770 528 ProSiteProfiles 'Homeobox' domain profile. 429 492 IPR001356 GO:0003677
Lele28g0770 528 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 188 508 - -
Lele28g0770 528 Gene3D - 435 513 - -
Lele28g0770 528 SMART prehox3 235 388 IPR006563 -
Lele28g0770 528 Pfam Homeobox KN domain 449 488 IPR008422 GO:0003677|GO:0006355
Lele28g0770 528 SMART HOX_1 432 496 IPR001356 GO:0003677
Lele28g0770 528 MobiDBLite consensus disorder prediction 508 528 - -
Lele28g0770 528 SUPERFAMILY Homeodomain-like 434 501 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0770 Lele-ChrLele28 4916489 4918336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0770 202 505 Homeobox Transcription Factor Family AT4G32980 56.329 4.37e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele28g0770 POX 2e-26 No_clan