Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0757 ATGATGAAAGCTTTGATGGTGGATGAGAATATGTCCAATTTGACATCTGCATCTAGTGAAATAAGCGCTTCTTCTGGCACTAGAAATGATACTCCTGTCTCTCTCTATCCTCACCAGTACTCCTCCACATCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTCCCGGGCAATCCAGACCCAGAGGCTGAAGTAATAGCCTTGTCTCCCAAGACCCTCTTGGCGACGAACAGATTCATTTGCGAAGTATGCAACAAAGGGTTTCAAAGAGACCAAAATCTTCAGCTCCACAGAAGAGGCCACAACTTGCCATGGAAGCTCAAGCAAAGAAACAGCAAAGAAGTCATTAGAAAGAAGGTGTATGTTTGCCCGGAGTTAACGTGTGTTCATCATGACCCCTCAAGGGCCCTCGGAGACCTCACCGGCATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAAAAATGGAAGTGTGAGAAATGCTCCAAGCATTACGCTGTTCAGTCTGACTGGAAGGCTCACTCTAAGATTTGTGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCTAGAAGGGACAGTTTCGTCACACACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCAAGAGCAATAACAGCAGTGAACCCTCTTCTTCATAGCCATCCCCAGCTCCAAGCTTCAACACCACCATTACTCGCCAAAAAAGAACAAGATTTTCCACCATGGTTGGGAGAATCTGCAACTGGAAACACTCTTATCAGGCCTTTAATGTCCTCTTCACATTTAGACCAGTCCTTAAATTTAATCTATCACAATCAAAACCCTAATAACCTCACACCGACAGCGTCCCTTGCAGCTCGTTTCCAATCCCCGGCCTCTCCTTATTACATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATAGGTCACATGCCTCAATCTGATCCTCAATGTACCACCATGCCTAATTCATCCTCTTCTTCAGCTGTTTCTGGTTCGGGTATGCTTTCACGTGACCAGATGTGGTTGCCTCTTCATGCTTCGGCTTCTTATGGGAATAAAGCTGCTGGCTTCGCCTCTGATAATTACTTAGAAGATGCTGCTATTTCTGTAAAATGCAATAATAATACAGCATCTCCACCACCACCAACTACTACTTCTCTTTTCCATGACATGATGACTAATGCTACTGCTTCTACTGTGCCTTCTTCTGCTTCTGCCTTCGAGAGGTCTTCCTTCGAGGATGCTTTGAGAGGAATGTTGAGTCCAACAAGAGACACTGCTAGCCATGAAATGACCCGAGATTTTCTTGGTCTCAAGGCATTTTCTCAACAAGATTTTTTAAACATATCGGGGCTTGACCATTTGGGTTCTTCGTCGTATGGTAAGCAAAGTCGCAACCAGACACCCTGGCAAGGTTAA 1443 0.4532 MMKALMVDENMSNLTSASSEISASSGTRNDTPVSLYPHQYSSTSTNQEPQPKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVIRKKVYVCPELTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKHYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFVTHRAFCDALAQESARAITAVNPLLHSHPQLQASTPPLLAKKEQDFPPWLGESATGNTLIRPLMSSSHLDQSLNLIYHNQNPNNLTPTASLAARFQSPASPYYMSATALLQKASQIGHMPQSDPQCTTMPNSSSSSAVSGSGMLSRDQMWLPLHASASYGNKAAGFASDNYLEDAAISVKCNNNTASPPPPTTTSLFHDMMTNATASTVPSSASAFERSSFEDALRGMLSPTRDTASHEMTRDFLGLKAFSQQDFLNISGLDHLGSSSYGKQSRNQTPWQG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0757 480 MobiDBLite consensus disorder prediction 9 53 - -
Lele28g0757 480 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lele28g0757 480 MobiDBLite consensus disorder prediction 317 340 - -
Lele28g0757 480 MobiDBLite consensus disorder prediction 1 65 - -
Lele28g0757 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 453 IPR031140 -
Lele28g0757 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Lele28g0757 480 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
Lele28g0757 480 SUPERFAMILY beta-beta-alpha zinc fingers 80 178 IPR036236 -
Lele28g0757 480 Gene3D Classic Zinc Finger 136 216 - -
Lele28g0757 480 FunFam protein indeterminate-domain 12-like 60 129 - -
Lele28g0757 480 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Lele28g0757 480 SMART c2h2final6 158 178 IPR013087 -
Lele28g0757 480 SMART c2h2final6 81 103 IPR013087 -
Lele28g0757 480 SMART c2h2final6 123 153 IPR013087 -
Lele28g0757 480 Gene3D Classic Zinc Finger 60 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0757 Lele-ChrLele28 4821750 4823607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0757 7 323 IDZ Gene Family AT1G55110 54.775 6.26e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele28g0757 zf-C2H2_jaz 8.1e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0762 25 4832847 4834699 Lele28g0757 28 4821750 4823607 hybridization
Lele26g0769 26 4899869 4901725 Lele28g0757 28 4821750 4823607 hybridization