Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0748 ATGTCCGTAATTTGTAATTCCTGGTCTACGTTACTATCTCTGTTTACAAACATGGCTGGCGTGGCACCAGAAGGGTCACAATTTGATGCTCGTCAATTTGATGCTAAGATGAGTGAATTACTTGGAAATGAAGGGCAGGACTTTTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGAGGCATTTATGCTTATGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGGATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAGGCACAATCTGGAACTGGTAAAACTGCTACTTTTTGTTCTGGAGTTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAAGCTCTGGTTCTTGCTCCTACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCGCTGGGCGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGTGGCACCAGTGTCCGAGAAGACCAGCGTATCCTCTCAGCTGGGGTACATGTTGTTGTTGGTACCCCTGGTCGTGTGTTCGACATGCTTCGTAGACAATCTCTCCGCCCTGATTACATTAAAATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTCCAGCTGCTGCCACCAAAAATTCAGGTTGGGGTTTTCTCCGCCACTATGCCACCTGAGGCTCTTGAGATTACAAGGAAGTTCATGAATAAACCTGTGAGGATCTTGGTGAAGCGTGATGAGCTTACCTTGGAAGGGATCAAGCAATTTTACGTCAATGTTGAGAGAGAGGAATGGAAGCTGGAGACACTTTGTGATCTTTATGAGACACTGGCAATTACCCAGAGTGTTATCTTTGTGAACACTAGGCGCAAGGTGGATTGGCTTACGGACAAGATGCGCAGCCGTGATCACACTGTTTCTGCAACCCATGGAGATATGGACCAAAACACAAGGGACATCATCATGAGGGAATTCCGTTCTGGGTCTTCCCGCGTTTTAATCACCACAGATTTATTGGCCCGCGGTATTGATGTCCAGCAAGTTTCTCTCGTGATTAATTACGATCTCCCAACCCAGCCGGAGAACTACCTCCATCGAATTGGTCGTAGCGGTCGTTTTGGGAGGAAGGGTGTCGCTATTAATTTTGTGACCAAGGACGATGATAGGATGCTGTTTGACATTCAAAAGTTTTATAATGTTTTGATTGAAGAGCTGCCGGCCAATGTTGCTGATCTCCTTTGA 1293 0.4532 MSVICNSWSTLLSLFTNMAGVAPEGSQFDARQFDAKMSELLGNEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVLIEELPANVADLL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0748 430 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 56 410 - -
Lele28g0748 430 CDD DEADc_EIF4A 61 259 - -
Lele28g0748 430 FunFam Eukaryotic initiation factor 4A-II 45 264 - -
Lele28g0748 430 FunFam Eukaryotic initiation factor 4A-III 265 430 - -
Lele28g0748 430 SMART ultradead3 76 273 IPR014001 -
Lele28g0748 430 Pfam Helicase conserved C-terminal domain 283 391 IPR001650 -
Lele28g0748 430 CDD SF2_C_DEAD 270 400 - -
Lele28g0748 430 Pfam DEAD/DEAH box helicase 82 243 IPR011545 GO:0003676|GO:0005524
Lele28g0748 430 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 204 212 IPR000629 -
Lele28g0748 430 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 85 IPR014014 GO:0003724
Lele28g0748 430 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 258 IPR014001 -
Lele28g0748 430 Gene3D - 47 265 IPR027417 -
Lele28g0748 430 Gene3D - 266 430 IPR027417 -
Lele28g0748 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 411 IPR027417 -
Lele28g0748 430 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 430 IPR001650 -
Lele28g0748 430 SMART helicmild6 310 391 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0748 Lele-ChrLele28 4767342 4770548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0748 18 430 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 767