Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele28g0725 | ATGGGTTGGGGTCACCTGGGAAGGAGGGGGCAATCCAACTCGGGTGAGCCGAGTACCAGTGCGGAGGCTGCTCCTACCAACACCGAACAAGCCGTACCTCGGCGATTCCCCCTTGCTGCTCAGCCTGAGATCATGAGAGCGGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGATTCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGACAAAACTATTGGGACAAATGCTTTACTATGTGCTGACAACTGGTTCAGGACAACAGACGCTCGGAGAGGAATACTGTGACATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAACGAATAAGTTCTAGAATTGCTTCCCGAGGAATTGCCCTTGCTGATTCACAATCTGCTGAGATCTATGGTGAAAATGGTACCCTTAGGAGTAATGAATTTCAAACTTCTGATGTGAGTGAACTTCCCTCTTCTACGTCAGGGCAATCTCTTACAACTCTGACAAGTTTGAAGGAGAAACTGAGAGGATTCTGGTTGCATGCAGTTCAGAGATGGCCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAATTGGTTCTTCGTGCTAATCTTATGCTCTTCTATTTTGAAGGTCTCTATTATCATATACCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATTAAATCAAAGGCCCAGATACCAAATTTTGGGTGTATTTCTGTTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTTCGACGAAGCAGTTTATCTTCAATTGCAAGTTCAGTCCATCAGACATCCTTTGGGACGCACCAGGGATCATCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCGGCATCTTCTGATACAGACAAAGGAAATTGGTTATCTGACACTACACATTCTGAGTCCCAAGCAACTAGTGGAGTGAGCAAATGCACGCTCTGCCTGAGTAATCGGCAACACCCAACAGCCACTTCCTGTGGCCATGTGTTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACACACTCAAGTCTAGTGTGCCTGTATCATTCAGACTTCTAG | 1209 | 0.464 | MGWGHLGRRGQSNSGEPSTSAEAAPTNTEQAVPRRFPLAAQPEIMRAAEKDDQYASFVYEACRDSFRHLFGTRVAVTYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAEIYGENGTLRSNEFQTSDVSELPSSTSGQSLTTLTSLKEKLRGFWLHAVQRWPTMLPMVRELLQLVLRANLMLFYFEGLYYHIPKRAAGIRYVFIGKSLNQRPRYQILGVFLLIQLCIIAAEGLRRSSLSSIASSVHQTSFGTHQGSSGRGLPVLNEEGLPASSDTDKGNWLSDTTHSESQATSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF | 402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele28g0725 | 402 | FunFam | Peroxisome biogenesis factor 10 | 323 | 399 | - | - | |
| Lele28g0725 | 402 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Lele28g0725 | 402 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
| Lele28g0725 | 402 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 399 | IPR013083 | - | |
| Lele28g0725 | 402 | ProSitePatterns | Zinc finger RING-type signature. | 363 | 372 | IPR017907 | - | |
| Lele28g0725 | 402 | ProSiteProfiles | Zinc finger RING-type profile. | 348 | 386 | IPR001841 | - | |
| Lele28g0725 | 402 | PANTHER | PEROXISOME ASSEMBLY PROTEIN 10 | 37 | 400 | - | - | |
| Lele28g0725 | 402 | MobiDBLite | consensus disorder prediction | 318 | 338 | - | - | |
| Lele28g0725 | 402 | SUPERFAMILY | RING/U-box | 347 | 391 | - | - | |
| Lele28g0725 | 402 | Pfam | Ring finger domain | 347 | 386 | IPR001841 | - | |
| Lele28g0725 | 402 | Pfam | Pex2 / Pex12 amino terminal region | 51 | 286 | IPR006845 | - | |
| Lele28g0725 | 402 | SMART | ring_2 | 348 | 385 | IPR001841 | - | |
| Lele28g0725 | 402 | CDD | RING-HC_PEX10 | 347 | 386 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele28g0725 | Lele-ChrLele28 | 4638067 | 4642431 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele28g0725 | 343 | 398 | C3H Transcription Factor Family | AT4G27470 | 37.879 | 9.95e-10 | 57.0 |