LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0706	ATGGCTTCCTCGATCCCTAATGATTCCGATCACACTCTGAGAACTACTAGCGACTCTTGCTCCACTAAGTACAAAGGCGTTCGAAAACGAAAATGGGGCAAATGGGTGTCTGAAATCAGACTTCCCAACAGCCGCGAGCGCATTTGGTTGGGCTCCTATGACTCTCCGGAGAAGGCGGCTCGAGCCTTCGACGCCGCCCTCTACTGTCTGCGCGGTCGCCATGCTAATTTCAACTTCCCGGACAGCCCTCTGGAGTTGGAGATGATCGCTGTCTCCGGTGATCATCGACCCCAGTCTCGTTCCCCTCAAGAAATCCAAGAGCTTGCTGCTAGGTTTGCCAACGAGTACCAGCAGGAGCCACAGCTGGTTCAGCAGTCTTCGGAAGCGGCCGCTCCTTCTTCCTGCGAATCGGATGGCGTTACTGAGAGTGGTGATCCTGTAGAGGTGGACAACGGTGTCGGGGACATAAGGGGCATTAACGACTGGTCGTTTTTGAAGTCACTGGATGACATTGGCCCCGCCAATTACAGTAATTGTAATTATAATGGTTTCTACTCTGGATTCGACAAGATGCAGCCTGGGGAGTTATTGCTTCCCACATCACCACCTCATTTGCACATCGATCATAATGTTAGTGACAATGGCGGGAATGCAATGGAATGCGACGACGCTTTTTCCCAACAATCATTGTTCCTTTGGAACTTTTGA	708	0.5127	MASSIPNDSDHTLRTTSDSCSTKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPDSPLELEMIAVSGDHRPQSRSPQEIQELAARFANEYQQEPQLVQQSSEAAAPSSCESDGVTESGDPVEVDNGVGDIRGINDWSFLKSLDDIGPANYSNCNYNGFYSGFDKMQPGELLLPTSPPHLHIDHNVSDNGGNAMECDDAFSQQSLFLWNF	235

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0706	235	Pfam	AP2 domain	22	72	IPR001471	GO:0003700\|GO:0006355
	Lele28g0706	235	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	14	146	-	-
	Lele28g0706	235	SUPERFAMILY	DNA-binding domain	23	82	IPR016177	GO:0003677
	Lele28g0706	235	Gene3D	AP2/ERF domain	22	81	IPR036955	GO:0003700\|GO:0006355
	Lele28g0706	235	MobiDBLite	consensus disorder prediction	119	140	-	-
	Lele28g0706	235	MobiDBLite	consensus disorder prediction	119	152	-	-
	Lele28g0706	235	PRINTS	Ethylene responsive element binding protein signature	46	62	IPR001471	GO:0003700\|GO:0006355
	Lele28g0706	235	PRINTS	Ethylene responsive element binding protein signature	24	35	IPR001471	GO:0003700\|GO:0006355
	Lele28g0706	235	FunFam	Ethylene-responsive transcription factor 2	22	81	-	-
	Lele28g0706	235	CDD	AP2	22	82	IPR001471	GO:0003700\|GO:0006355
	Lele28g0706	235	SMART	rav1_2	23	86	IPR001471	GO:0003700\|GO:0006355
	Lele28g0706	235	ProSiteProfiles	AP2/ERF domain profile.	23	80	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0706	Lele-ChrLele28	4505715	4506422	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0706	19	235	AP2-EREBP Transcription Factor Family	AT1G74930	42.986	1.55e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele28g0706		AP2	1.2e-12	CL0081