Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0701 ATGAAATATAAGGACATGGATTGGGAGACAAGGCATAATGAAGGTGGAGGCCTTGCCTGTAATTACGGGATGAATCAGGTTGATGAGTATCGATTCTGGGAAAAGCAAGGTCTCTCGTCATATGACATAAAGGGGAAGGCATTATTTAAAGATAGGATTGAATTGGTGGGCAATCTTAATCGCCATTTGAATATGAATATGCATGATGCAGTGTGCAACAGTAGTGATGACGATAGAGTGCTATTACGTGGCAACTCATTTACAAAAAAAGTTGAGTTGAAACAGGCGATTGCGATGTCACAAGTGTACAAGAATGTTGAAAAGGTGAGAAAGATGGATGCAGATCTAGAGAACACGATAATAAAAGGGTCATTCCCCGAGTCTTTCTTCTTGACAGTGGATTATTGTTTAGGACATGCCATTCAGATCATGAATCTACGGGCAAAAGCTATTTGGACATTCTCATCCAACATTTTTCTTCTTTCTGGGATTTCCGTGGTGTCTGGATTTTCTCATTGGAAGCACAAAGATTGCACAGAAGCAAGTGGATATAATAGTAAATCTGTTTCAATGGTTTGCGAGATGGAGCATGACCTGATGGAGGACATGGACATAGAAGTCCTCCCTTCAATGTGGCCAGAAGATATTGGAACTGATGCTGGAAAGCAGTTTAACGTAGAGAAGCCTGGAATTGACCAAGACATGTTAGAGGAGGTCACAATAGTGGAGGAACCAACCATAGTAGATTTCAAGCGTCTTATGGAGCTCACCAACCATACAGACAGAGGCTCATCTCAGTTGACATATTTCATGAAATACTTGGAGTACAGGCAGGCTAATGCGGTGCGTCTCCTACGAGAAGAACTTGACAGCCTAAGCAAACAGAGACAGGAGGTTGAGCTGAGGAAGTTAAAGATATTGGAAGAGCACCGGTTTGTGGACATAAGATATGGGGAAGACAAACGACCAGTTTCTATATTGGATGAAGTTTATGACATATGGCAAGATATACCTCGTAGGAAAAATGACGTTGTTGTTCAGAACAAGGGTATTGAAATAGATGCTGTGGATGATACTGTAGTGTACTGGAAGCAGAGGACACTGCATTTGGAAAAACTGTTGGAGGCAAGTATACAGAGAGAGCAGACACTAATGGAGAAGCTGGAAGAAAGCATAAAGAAGCTTGAAAAGCAGTCTTGTCCTGTAGAAGAATTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTGCATTTTATTCTGCAGAATGCACCTGTTGTCATAGGCCATCAGGACACAGAGTTGCGCTATCGCTTTATCTATAACCATTTCCCAAGCTTGCAAGAGGAGGACATCATAGGAAGAACAGATGTGGAAATTTTCACGGGGTCTGGAGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTTTTGCAAAAAGGATTGCCTGCAAAAAGGGAAATTACTTTTGAGACAGAACTATTCGGGTCAAAGACATTCTTAATTTATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGGATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGAATAGCACAGATTAGGGAAGAGATTGCAGTTCAGAAAGCAAAGGAGACTGAATTAAATAAGACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTAGCAACCATGTCCCATGAAATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACTACGAAACTTGACAAGGAGCAAAGACAGCTCCTGGAAGTCATGCTTTCCTCAGGAGATTTGGTTCTTCAACTTATCAATGACATATTAGATCTCTCTAAGGTTGAGTCAGGAGCCATGAAGTTGGAAGCTACCAAATTCCGTCCAAGAGAGGTAGTAAAGCATGTGCTGCAGACTGCTGCAGCATCACTGCAGAAAATATTAACCCTACAAGGTCATGTGGCAGATGATGTACCTATCGAGGTCATTGGAGATGTTTTAAGGATTCGGCAAACCCTCACAAATCTCATAAGCAATGCAATCAAGTTTACCCATGAAGGTAAAGTTGGCATAAATCTCTACGTTGTAGCAGAGCCCAACTTTGGAATATCGGAAGGTCTCCAAAAGATGAGTGGAGACAAGTCAAATGTATCAGTGAGTGGATTAACAGAAGAGAAATACTTCTCAGCGTCTCAAAATGGGAGTGATGAATGTAGATCTCCAGTTAAAAGTGAATGCTCAAGAAATGGGGATACAGAGGAACAACCTCATTCAACCGAAACAACAGTGTGGATACGTTGTGATGTATACGACACTGGAATTGGAATACCAGAAAAAGCAATTCCTACTTTATTTAAAAGGTACATGCAAGTCAGTGTAGACCACGCGCGAAAGTATGGTGGCACAGGGCTAGGATTAGCAATATGCAAACAACTGGTCGAATTAATGGGTGGTCGTCTAACGGTGTCAAGCAAAGAAAACTGTGGTTCTACATTTACGTTCATACTACCGTACAAGGTTTCTACAGCTTGTGATCATTCAGATGACCCCGACGAGCTCTCAGATATGGAGAACGACGATGCAGCGTCTGATGATGCGACACAAGGATTCTTCCAATTCCAACCACGTACATTGGGCTCACTTTTCTCTTCCAACGAATCTACCAGAGCTTCAAAGTTGTCACCCCATAAACTTGGGCTCACATTCCCTCGTAACTTTAATGGGTTTTCGCAGAATTCTTATGACGTCTCTTCAAAAGGAAGAACTTCGGCCGAAGATGCAATCCGAGTGACAGTAACGGACGCGCCGGAGATGTCTGAATCAGGAAGTTCAATGACTCAAAAGCCAGAAACAGAGAACGAAAATGTAGTTAGCAGAGACAAGCACCGTCAAGATAACACATGCACTCAACTCCCGAATGGTATTTCAAGTAGAGAAATTGGTGTGGCAACACAGCCAAGCAGAACCCAGCAATCAAGTGACACTCAAGAGAAGGATAACAGAACTTCCCAATGTGTTACTAGCAGCAGTAATAGTATATCAGAAGTGGCCAAACCCCCATTACAGCCTAAGATCCTTCTAGTTGAAGATAACAACGTCAACGTTATGGTGGCACGCTCGATGATGAAGCAACTAGGTCACAGCATAGATGTGGTTAATAATGGAGTGGAAGCTGTGCGTGCAGTTCAGCGCAGGAGTTATGACGTCATTCTAATGGATGTGTTCATGCCCGTTATGAATGGTCTTGAAGCCACAAAATTGATTCGCTCTTTTGAGGAAACTGGCAATTGGGATGCTGCAATAAAAGCTGGAATAGAGCCAAGCATTTCAACTTCAGATTTGCAGAAACCAGAATGTTGTCTGCCTTCCACAAAGCGAATGCCCATTATTGCAATGACGGCAAATGCTTTATCAGAGAGTGCAGAAGAGTGTTATGCAAATGGAATGGACTCATTTGTGTCTAAACCGGTGACTTTCCAGAAATTGAAGGAGTGCCTTGAACAATTCCTACGGTGA 3540 0.422 MKYKDMDWETRHNEGGGLACNYGMNQVDEYRFWEKQGLSSYDIKGKALFKDRIELVGNLNRHLNMNMHDAVCNSSDDDRVLLRGNSFTKKVELKQAIAMSQVYKNVEKVRKMDADLENTIIKGSFPESFFLTVDYCLGHAIQIMNLRAKAIWTFSSNIFLLSGISVVSGFSHWKHKDCTEASGYNSKSVSMVCEMEHDLMEDMDIEVLPSMWPEDIGTDAGKQFNVEKPGIDQDMLEEVTIVEEPTIVDFKRLMELTNHTDRGSSQLTYFMKYLEYRQANAVRLLREELDSLSKQRQEVELRKLKILEEHRFVDIRYGEDKRPVSILDEVYDIWQDIPRRKNDVVVQNKGIEIDAVDDTVVYWKQRTLHLEKLLEASIQREQTLMEKLEESIKKLEKQSCPVEELSQILKRADNFLHFILQNAPVVIGHQDTELRYRFIYNHFPSLQEEDIIGRTDVEIFTGSGVKESQDFKREVLQKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERIAQIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLEVMLSSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKILTLQGHVADDVPIEVIGDVLRIRQTLTNLISNAIKFTHEGKVGINLYVVAEPNFGISEGLQKMSGDKSNVSVSGLTEEKYFSASQNGSDECRSPVKSECSRNGDTEEQPHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSVDHARKYGGTGLGLAICKQLVELMGGRLTVSSKENCGSTFTFILPYKVSTACDHSDDPDELSDMENDDAASDDATQGFFQFQPRTLGSLFSSNESTRASKLSPHKLGLTFPRNFNGFSQNSYDVSSKGRTSAEDAIRVTVTDAPEMSESGSSMTQKPETENENVVSRDKHRQDNTCTQLPNGISSREIGVATQPSRTQQSSDTQEKDNRTSQCVTSSSNSISEVAKPPLQPKILLVEDNNVNVMVARSMMKQLGHSIDVVNNGVEAVRAVQRRSYDVILMDVFMPVMNGLEATKLIRSFEETGNWDAAIKAGIEPSISTSDLQKPECCLPSTKRMPIIAMTANALSESAEECYANGMDSFVSKPVTFQKLKECLEQFLR 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0701 1179 PRINTS Bacterial sensor protein C-terminal signature 773 787 IPR004358 GO:0016310|GO:0016772
Lele28g0701 1179 PRINTS Bacterial sensor protein C-terminal signature 808 826 IPR004358 GO:0016310|GO:0016772
Lele28g0701 1179 PRINTS Bacterial sensor protein C-terminal signature 832 845 IPR004358 GO:0016310|GO:0016772
Lele28g0701 1179 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 560 626 IPR036097 GO:0000155|GO:0007165
Lele28g0701 1179 Coils Coil 371 398 - -
Lele28g0701 1179 Pfam His Kinase A (phospho-acceptor) domain 563 626 IPR003661 GO:0000155|GO:0007165
Lele28g0701 1179 MobiDBLite consensus disorder prediction 975 1025 - -
Lele28g0701 1179 Gene3D - 627 852 IPR036890 -
Lele28g0701 1179 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 672 846 IPR003594 -
Lele28g0701 1179 MobiDBLite consensus disorder prediction 749 763 - -
Lele28g0701 1179 Gene3D - 549 626 - -
Lele28g0701 1179 CDD HisKA 560 622 IPR003661 GO:0000155|GO:0007165
Lele28g0701 1179 Gene3D PAS domain 403 538 - -
Lele28g0701 1179 FunFam Putative histidine kinase 5 549 626 - -
Lele28g0701 1179 ProSiteProfiles Histidine kinase domain profile. 568 848 IPR005467 -
Lele28g0701 1179 CDD HATPase_EvgS-ArcB-TorS-like 677 845 - -
Lele28g0701 1179 MobiDBLite consensus disorder prediction 740 765 - -
Lele28g0701 1179 SMART HisKA_10 561 626 IPR003661 GO:0000155|GO:0007165
Lele28g0701 1179 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 615 848 IPR036890 -
Lele28g0701 1179 ProSiteProfiles Response regulatory domain profile. 1032 1178 IPR001789 GO:0000160
Lele28g0701 1179 Gene3D - 1029 1179 - -
Lele28g0701 1179 MobiDBLite consensus disorder prediction 919 1025 - -
Lele28g0701 1179 MobiDBLite consensus disorder prediction 944 960 - -
Lele28g0701 1179 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 201 1178 - -
Lele28g0701 1179 Coils Coil 282 309 - -
Lele28g0701 1179 CDD REC_hyHK_CKI1_RcsC-like 1033 1174 - -
Lele28g0701 1179 FunFam Histidine kinase 5 403 538 - -
Lele28g0701 1179 FunFam Histidine kinase 5 1025 1179 - -
Lele28g0701 1179 SUPERFAMILY CheY-like 1031 1179 IPR011006 -
Lele28g0701 1179 SMART REC_2 1031 1174 IPR001789 GO:0000160
Lele28g0701 1179 SMART HKATPase_4 672 848 IPR003594 -
Lele28g0701 1179 Pfam Response regulator receiver domain 1033 1100 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0701 Lele-ChrLele28 4460994 4470521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0701 191 1178 Histidine Kinase Gene Family AT5G10720 59.077 0.0 1119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele28g0701 HATPase_c 8.9e-26 CL0025