Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0680 ATGGCACATATATTTTTTTGTTTTTTTTTCCTGCCCTTTTATTTCCAAGCTAAAATTCTTAATGTAGGATTCTTGCCACAAACTGAACTACTTCCCAGAGAAAGAGTCTATTCAGATCCCGCAACTCCAACGGATGCCTCTGCAACATCCTCAGCAGTGGCGTCAGGATTCTTCTTGATGGATAAAACCGAGTATCCTATGTCGGCTGTGAGAAGTAAGCCGACTGCAATCCCGGTGACGCCGGTGCTGAAGGAAAGAAGTCGCCTCCGGTTAAAATCCCTACGCGTAAAATCACTGATTCTTGTTTTTCTGATATTTTCTTGCTCAGTCTGTAAATACGATAGTGGAAAAGACTCGGTCTTGCAAGTAAGCAGGGAAGATTATGGGGACTGCAGCACAGCCAATCCTATCAAAGTGTACAATGATGGAAACACCAAGGTGAAGCTCGACCGTCCTGGGCCATTCTACTTCATTAGTGGGGCCAAGGGACACTGTGAGGAAGGCCAGAAGCTCATTGTGGTGGTTCTCACTCCAAAGCGCAGGTTCACCGGTATTTCTGCGGCACCTGCCCCGGCTCCGATGGAGTTTGAAGGCCCAGCTGGGGCTCTCACTAGTACTGCCTCAGCTTTAAAAGGCGGACTTGCAGCAGTTCTGGGATTTCTAACCATTTGGGCTTTCTGA 681 0.4758 MAHIFFCFFFLPFYFQAKILNVGFLPQTELLPRERVYSDPATPTDASATSSAVASGFFLMDKTEYPMSAVRSKPTAIPVTPVLKERSRLRLKSLRVKSLILVFLIFSCSVCKYDSGKDSVLQVSREDYGDCSTANPIKVYNDGNTKVKLDRPGPFYFISGAKGHCEEGQKLIVVVLTPKRRFTGISAAPAPAPMEFEGPAGALTSTASALKGGLAAVLGFLTIWAF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0680 226 Pfam Plastocyanin-like domain 111 169 IPR003245 GO:0009055
Lele28g0680 226 PANTHER BLUE COPPER PROTEIN 110 187 IPR039391 GO:0009055
Lele28g0680 226 Gene3D - 83 179 IPR008972 -
Lele28g0680 226 ProSiteProfiles Phytocyanin domain profile. 112 177 IPR003245 GO:0009055
Lele28g0680 226 SUPERFAMILY Cupredoxins 112 176 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0680 Lele-ChrLele28 4357723 4359576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0680 110 226 Phytocyanin Superfamily AT4G31840 55.085 1.67e-39 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0695 01 4080896 4088243 Lele28g0680 28 4357723 4359576 CCT
Lele02g0681 02 4091531 4100425 Lele28g0680 28 4357723 4359576 CCT
Lele03g0692 03 4089708 4098711 Lele28g0680 28 4357723 4359576 CCT
Lele04g0697 04 4229096 4239390 Lele28g0680 28 4357723 4359576 CCT
Lele25g0692 25 4368783 4369414 Lele28g0680 28 4357723 4359576 hybridization
Lele26g0697 26 4444957 4445588 Lele28g0680 28 4357723 4359576 hybridization