Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0671 ATGGATGGAAAGGGAGAAACGCTTCAATCGGAGTTGAAGCGTGTGAGAGATGAGAATAGCACTTTAAAATTGATGCTTCAAGTTCTGAACAGCAAATACCAGAAGGTTCTGTCTCAACTTGAAGAAATAAGAGGATTGGACTATTCGAATCAAATTGCATCAGTCTCGTCTGATTACGATACGATGAACAATAAGAGACCAAGAATTGAATTACCCATAGTTCATAAGCCACTGCAGATCTTCACCAGAACCCATCCCAAGGATAACAGTATGATAGTAAGAGATGGATATCAATGGAGGAAGTATGGCCAGAAAGTTACAAAAGACAATCCTTCGCCTCGAGCTTACTTCAGATGTTCCATGTCTCCAAACTGCCCGGTCAAAAAGAAGGTACAAAGATGTGTCCGAGACAGGTCAATCCTAGTGGCAACTTATGAAGGAGAACACAATCATGGGGTTGTTGATCCTAACACTCCCAAAGGCTCAATTTCTGACAACAAAGAAACGACCAACGTTAATGGTGTCGGGCTTCCTAGTTGGATTCAGACAGATAGAAGACAAAATGAGGATCTGAGCAACATCAGAATTGAACAATTTGTAGGTTCTCTCATCAAAGATCCCGACTTCACCGTATCGTTAGCCGAAGCAGTTGCACGCTCCATCACTACCCAACAACAACGTAAGCAACAAGACCTTGACCTTAATTTGAGCCTTGCTGAAGTGTAA 726 0.4215 MDGKGETLQSELKRVRDENSTLKLMLQVLNSKYQKVLSQLEEIRGLDYSNQIASVSSDYDTMNNKRPRIELPIVHKPLQIFTRTHPKDNSMIVRDGYQWRKYGQKVTKDNPSPRAYFRCSMSPNCPVKKKVQRCVRDRSILVATYEGEHNHGVVDPNTPKGSISDNKETTNVNGVGLPSWIQTDRRQNEDLSNIRIEQFVGSLIKDPDFTVSLAEAVARSITTQQQRKQQDLDLNLSLAEV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0671 241 Coils Coil 12 32 - -
Lele28g0671 241 MobiDBLite consensus disorder prediction 151 176 - -
Lele28g0671 241 MobiDBLite consensus disorder prediction 157 176 - -
Lele28g0671 241 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 44 IPR044810 GO:0003700
Lele28g0671 241 SUPERFAMILY WRKY DNA-binding domain 89 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g0671 241 Pfam WRKY DNA -binding domain 95 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g0671 241 SMART WRKY_cls 93 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g0671 241 Gene3D WRKY domain 80 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g0671 241 ProSiteProfiles WRKY domain profile. 88 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0671 Lele-ChrLele28 4310155 4311339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0671 2 217 WRKY Transcription Factor Family AT1G80840 35.606 1.97e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele28g0671 WRKY 1.7e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0682 25 4316513 4317644 Lele28g0671 28 4310155 4311339 hybridization
Lele26g0687 26 4397674 4398963 Lele28g0671 28 4310155 4311339 hybridization