Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0666 ATGGTGGAATATGGCTTCTGGGAGTTCATTAAAGCCAAATGCTTTGAACTAAACAGAACGAAGGGACTCCGAAAAGAGGACTTTGAAATTTGTACTGTCCCTTCAACAGCATTGAAGGAGGAAGATGGCAATCATACAAAAGCGAAAGGTATAGTATCTTGGCTTAGAAAAGAGGTCAGCGACTTTGATGTCGCCGAGAGTGCAAGCAAACGAACCGTTATCATGAGAGCACCAACAAACCAGAGTGTCACAGGAACATGTTTCGAATTCTTCTCAACAAGGTGCTGCCCTCTCCGTACCGAGCACTGTGAAATAGAAGCGATAATAATAATAATAGAATGGCAATGTAGGTCACCGTTACGCCGGAAAATGGCACAGTATCACCGGAGCAACGTCGGATCTCTGGTTCTCGACCATCACGATCCTACCAGGAATGCAACAGTCGGCGTCCACTGCCGCATATGGAATGCCTTGTCCGCTTCAACAATACGCCGCATCATTTTTGACGCTGTCAGCTGTGGCGGCGGCTCTCGGCATCACCGCCACCACCGTAATGACTTTGTCTCCACACCTTCGTCGAGTTCATCAGACTCCGGGAACTCTAAGGACAAGTCGCAAGAACAGAGACAGTGTGCTTCCAAGTCTCAGCCGAAACCAAATGCGAAGTCGGAGAAACTATCGGATCTTCTGAATATAGCGGAGTCTGAAATTGACGCCCAAACGAAGAAGAAAGAAGAGGCATTTCAGGAGTTGAAGAGAATTGTGAAGGAGTTACAGGCTGAGGATTTAACAAAGCGGCAAATGGCTGCGGCTAGCTTGAGATTGCTCGCAAAGGAAGGCTTGGAAGTCAGAGGGACACTTGCAATGCTTGGAGCGATTCCTCCCCTGGTTGGAATGCTTGATTTGGAAGACGTCAATTCTCAGATCTCTTCGCTCTATGCGTTACTCAATCTTGGAATCGGCAACGACGCAAATAAGGCAGCCATTGTCAAAGTTGGTTCTGTTCACAAAATGCTAAAGCTCATTGAATCACCAACTGATCCGGATTCATCCGTCTCTGAAGCAGTTGTTGCAAATTTCCTTGGCTTGAGTGCTTTGGATTCGAATAAACCAATAATTGGATCGTCTGGTGCGATTCCTTTCCTGTTTAGAACCCTGGAAAAATCGCATGAAAAAACTAGCCCCCAGGCTAAGCAAGATGCTCTCCGAGCACTTTACAATCTATCAATCTTCCCAGCCAACATCTCATTCATATTGGAAACGGATTTGGTTCCGTTTCTGATAAACGCAATAGGAGACATGGAAGTAAGTGAAAGAATTCTCGCGATCCTAAGCAATTTGGTACCAACTCCTGAGGGCCGAAAAGCAATAAGTGCCGTGCGAGATGCATTCCCCATTCTGGTTGATGTATTGAATTGGACAGATTCACCTGGATGCCAGGAAAAAGCATCTTATATCTTGATGATTATGGCACACAAAGCCTACGGTGACAGGCAGGCCATGATTGAGGCTGGGATTGCCTCGTCATTGCTCGAGTTGATGCTTCTGGGTACTGCCTTGGCACAGAAAAGGGCCTCGAGAATATTGGAATGCTTGAGAATAGACAAAGGGAAGCAGGTATCTGGGAGTTCTGGCGGAAACTTCAGTTCAACTGTATCTGCTCCCATTTGTGGCTCTTCGTCATCTTGTACGAAGCCAGATGGAAGTGGAGAGGAGTGTTTGGAGGAGGAGGAGGAAATGATGAGTGACGAGAAGAAGGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTGAAAAGGGCCAATTTGCCTCAAGATTTCGTTCCATCCGACAATTTTAAGGCACTCACTTCAGGATCAACTTCAAAAAGCCTGCCATTTTGA 1902 0.4627 MVEYGFWEFIKAKCFELNRTKGLRKEDFEICTVPSTALKEEDGNHTKAKGIVSWLRKEVSDFDVAESASKRTVIMRAPTNQSVTGTCFEFFSTRCCPLRTEHCEIEAIIIIIEWQCRSPLRRKMAQYHRSNVGSLVLDHHDPTRNATVGVHCRIWNALSASTIRRIIFDAVSCGGGSRHHRHHRNDFVSTPSSSSSDSGNSKDKSQEQRQCASKSQPKPNAKSEKLSDLLNIAESEIDAQTKKKEEAFQELKRIVKELQAEDLTKRQMAAASLRLLAKEGLEVRGTLAMLGAIPPLVGMLDLEDVNSQISSLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPTDPDSSVSEAVVANFLGLSALDSNKPIIGSSGAIPFLFRTLEKSHEKTSPQAKQDALRALYNLSIFPANISFILETDLVPFLINAIGDMEVSERILAILSNLVPTPEGRKAISAVRDAFPILVDVLNWTDSPGCQEKASYILMIMAHKAYGDRQAMIEAGIASSLLELMLLGTALAQKRASRILECLRIDKGKQVSGSSGGNFSSTVSAPICGSSSSCTKPDGSGEECLEEEEEMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPQDFVPSDNFKALTSGSTSKSLPF 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0666 633 SMART arm_5 322 365 IPR000225 GO:0005515
Lele28g0666 633 SMART arm_5 366 410 IPR000225 GO:0005515
Lele28g0666 633 SMART arm_5 453 492 IPR000225 GO:0005515
Lele28g0666 633 SMART arm_5 280 320 IPR000225 GO:0005515
Lele28g0666 633 SMART arm_5 411 449 IPR000225 GO:0005515
Lele28g0666 633 MobiDBLite consensus disorder prediction 177 226 - -
Lele28g0666 633 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 147 633 - -
Lele28g0666 633 Coils Coil 223 261 - -
Lele28g0666 633 Gene3D - 247 533 IPR011989 -
Lele28g0666 633 SUPERFAMILY ARM repeat 250 532 IPR016024 -
Lele28g0666 633 Coils Coil 574 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0666 Lele-ChrLele28 4258456 4263795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0666 246 545 U-box Gene Family AT2G23140 32.226 1.43e-30 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0683 01 4016009 4024576 Lele28g0666 28 4258456 4263795 CCT
Lele02g0671 02 4029613 4033130 Lele28g0666 28 4258456 4263795 CCT
Lele03g0678 03 4023655 4027156 Lele28g0666 28 4258456 4263795 CCT
Lele04g0685 04 4167101 4170369 Lele28g0666 28 4258456 4263795 CCT
Lele25g0674 25 4256202 4258206 Lele28g0666 28 4258456 4263795 hybridization
Lele26g0682 26 4349839 4351835 Lele28g0666 28 4258456 4263795 hybridization